Gene detail

Detail information of GWHGAAZE024897

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP28638.1	2.8789E-179	hypothetical protein JCGZ_14409 [Jatropha curcas]
COG	YP_008151634.1	1E-24	hypothetical protein SCE1572_26190
Swissprot	tr\|Q05609\|CTR1_ARATH	7E-39	Serine/threonine-protein kinase CTR1
trEMBL	tr\|A0A067K0Q0\|A0A067K0Q0_JATCU	1E-179	Uncharacterized protein {ECO:0000313\|EMBL:KDP28638.1}
TAIR10	AT1G14000.1	2E-63	VH1-interacting kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51436096	51443347	+
GWHAAZE00000007	mRNA	51436096	51443347	+
GWHAAZE00000007	exon	51436096	51436131	+
GWHAAZE00000007	exon	51438468	51438562	+
GWHAAZE00000007	exon	51438734	51438776	+
GWHAAZE00000007	exon	51439165	51439251	+
GWHAAZE00000007	exon	51439428	51439522	+
GWHAAZE00000007	exon	51440452	51440572	+
GWHAAZE00000007	exon	51440646	51440725	+
GWHAAZE00000007	exon	51441450	51441512	+
GWHAAZE00000007	exon	51441969	51442081	+
GWHAAZE00000007	exon	51442487	51442572	+
GWHAAZE00000007	exon	51442725	51442843	+
GWHAAZE00000007	exon	51443209	51443347	+
GWHAAZE00000007	CDS	51436096	51436131	+
GWHAAZE00000007	CDS	51438468	51438562	+
GWHAAZE00000007	CDS	51438734	51438776	+
GWHAAZE00000007	CDS	51439165	51439251	+
GWHAAZE00000007	CDS	51439428	51439522	+
GWHAAZE00000007	CDS	51440452	51440572	+
GWHAAZE00000007	CDS	51440646	51440725	+
GWHAAZE00000007	CDS	51441450	51441512	+
GWHAAZE00000007	CDS	51441969	51442081	+
GWHAAZE00000007	CDS	51442487	51442572	+
GWHAAZE00000007	CDS	51442725	51442843	+
GWHAAZE00000007	CDS	51443209	51443347	+

Transcript Sequence
>GWHTAAZE024931 ATGATAACAGGAAAGGGGTCAGTTCGGAAATGTCATCCACTTTCGGATGCTCGTAGCTCAGGTCATTTGGACATTTGCAAAATTCTGGAGGCCCATGGTGGAATTGATCCGGTATTTCACTTTCTTAACATATGGGCTATTTTTAAAGAGAAACATTTTTATGTATGCTCTAGGGGGGCACTTGAAGTTGAAACTCAGACTCCATGTTATGAAATTGATCACAATGAAGTGAACATGAAAGCCGCAAATCTTATTGGACAAGGTGCATTTGGTGAAGTTTATTCAGTAAAGTGGCGCGGAACTGAAGTTGCAGCGAAAACAATTCGTTCTTCAATTGCATCAAGCCAATCAGTGAAGATGACCTTTTTAAAGGAACTGGCTTTGTGGCAGCGATTGCGCCACCCCAACATAGTGCAGTTCCTTGGTGTTCTAAAGGACTCTGATCGCTTAATCTTCCTCACTGAGTACCACCAAAATGGAAGTTTGTTTGACATTTTAAGGAAGAGAGGAAGACTTGATCCAGTGACAGCTGTTGCTTATGCTTTAGATATTGCGAGAGGTATGAATTATCTTCATCAGCATAAACCGCATGCTATTATACACCGGGATTTGACCCCAAGAAATGTATTACAGGATGGAGCAGGGCACCTTAAAGTCACAGACTTTGGCTTAAGTAAAATTGTACAAGAAAAAGATGATTATGGTTATAAAATGACTGGAGGAACTGGATCATATCGTTACATGGCTCCTGAGGTTTATCGACGAGAAGCATATGGGAAGAGTGTCGATGTATTTTCCTTTGCTTTAGTAGTACACGAGATGTTCCAAGGAGCGCCATCAAATTGGGAAGAAGCTGGAAACAAAATTGCAGACAGGCGAGCGTATGAAGATATTCGGCCGCACCTATCTCCTCACTTGTACCCCGAACCAGTCCGATTGCTTCTTCAAGATTGCTGGCACCGGAATCCAGATCTTCGACCTACATTCGAAGAAATAATCACACGGCTGGAAACAATCCAAGATAATCAGCAAAATTTGAAGGGCATTCGAAACTCCTGTACTTGTGTTGTTTTATAA

Network for GWHGAAZE024897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	82	336	9.00E-57

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-5

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.529
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.168
	SRR3591708	Shoot apex	0.873
	SRR3591709	Stem	0.268
	SRR3591710	White floral bud	3.035
	SRR3591711	White flower	3.063
	SRR3591712	Green floral bud	4.895
	SRR3591713	Yellow flower	2.069
SRP173429	SRR8316895	Juvenile bud stage	2.896
	SRR8316896	Juvenile bud stage	8.691
	SRR8316897	Juvenile bud stage	6.156
	SRR8316894	Third green stage	2.316
	SRR8316900	Third green stage	7.547
	SRR8316901	Third green stage	10.782
	SRR8316898	Complete white stage	1.884
	SRR8316899	Complete white stage	1.194
	SRR8316903	Complete white stage	3.619
	SRR8316902	Silver flowering stage	0.884
	SRR8316904	Silver flowering stage	1.123
	SRR8316905	Silver flowering stage	0.432
	SRR8316906	Gold flowering stage	0.950
	SRR8316907	Gold flowering stage	1.174
	SRR8316908	Gold flowering stage	1.844
SRP132670	SRR6706286	Control	4.898
	SRR6706287	Light intensity 50%	3.800
	SRR6706288	Light intensity 20%	3.901
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.365
	CNS0095593	Slightly white alabastrum(diploid) 2	7.527
	CNS0095594	Slightly white alabastrum(diploid) 3	11.910
	CNS0095595	Whole white alabastrum(diploid) 2	15.005
	CNS0095596	Whole white alabastrum(diploid) 3	19.069
	CNS0095597	Whole white alabastrum(diploid) 4	15.733
	CNS0095598	Silvery flower (diploied) 1	1.698
	CNS0095599	Silvery flower (diploied) 2	0.355
	CNS0095600	Silvery flower (diploied) 3	1.198
	CNS0095601	Golden flower (diploid) 1	1.043
	CNS0095602	Golden flower (diploid) 2	1.456
	CNS0095603	Golden flower (diploid) 3	1.180
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.573
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.355
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.092
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.973
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.608
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.128
	CNS0095610	Silvery flower (tetraploid) 1	6.589
	CNS0095611	Silvery flower (tetraploid) 2	9.884
	CNS0095612	Silvery flower (tetraploid) 3	7.059
	CNS0095613	Golden flower (tetraploid) 1	4.025
	CNS0095614	Golden flower (tetraploid) 2	4.513
	CNS0095615	Golden flower (tetraploid) 3	1.598
CRA001975	CRR073297	Stem 1	5.935
	CRR073298	Stem 2	5.602
	CRR073299	Stem 3	2.359
	CRR073300	Leaf 1	7.674
	CRR073301	Leaf 2	7.255
	CRR073302	Leaf 3	3.874
	CRR073303	Juvenile bud 1	2.628
	CRR073304	Juvenile bud 2	4.168
	CRR073305	Juvenile bud 3	1.325
	CRR073306	Third green 1	1.371
	CRR073307	Third green 2	1.389
	CRR073308	Third green 3	1.248
	CRR073309	Second white 1	0.199
	CRR073310	Second white 2	1.235
	CRR073311	Second white 3	0.535
	CRR073312	Silver flowering 1	1.478
	CRR073313	Silver flowering 2	1.514
	CRR073314	Silver flowering 3	0.851
	CRR073315	Gold flowering 1	0.143
	CRR073316	Gold flowering 2	0.879
	CRR073317	Gold flowering 3	0.525
	CRR073318	Tawny withering 1	2.419
	CRR073319	Tawny withering 2	3.166
	CRR073320	Tawny withering 3	2.127