Gene detail

Detail information of GWHGAAZE024895

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008232905.1	3.5727E-115	PREDICTED: acyl-coenzyme A thioesterase 8 [Prunus mume]
COG	YP_001417111.1	8E-27	acyl-CoA thioesterase II
trEMBL	tr\|D7UC96\|D7UC96_VITVI	5E-115	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40361.3}
TAIR10	AT1G01710.1	3E-66	Acyl-CoA thioesterase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51403348	51408514	+
GWHAAZE00000007	mRNA	51403348	51408514	+
GWHAAZE00000007	exon	51403348	51403363	+
GWHAAZE00000007	exon	51403439	51403531	+
GWHAAZE00000007	exon	51405332	51405399	+
GWHAAZE00000007	exon	51405491	51405572	+
GWHAAZE00000007	exon	51405989	51406035	+
GWHAAZE00000007	exon	51406096	51406290	+
GWHAAZE00000007	exon	51407113	51407190	+
GWHAAZE00000007	exon	51407786	51407876	+
GWHAAZE00000007	exon	51408390	51408514	+
GWHAAZE00000007	CDS	51403348	51403363	+
GWHAAZE00000007	CDS	51403439	51403531	+
GWHAAZE00000007	CDS	51405332	51405399	+
GWHAAZE00000007	CDS	51405491	51405572	+
GWHAAZE00000007	CDS	51405989	51406035	+
GWHAAZE00000007	CDS	51406096	51406290	+
GWHAAZE00000007	CDS	51407113	51407190	+
GWHAAZE00000007	CDS	51407786	51407876	+
GWHAAZE00000007	CDS	51408390	51408514	+

Transcript Sequence
>GWHTAAZE024929 ATGAACACCGAAACAGTGATGGAGTTCTTAGTTTGCGTGCCTTTGCTTCAGAGACTCCCGAGCTCATCTCTCAGGAAAATCGCCCAAGTCGTCACCCTTAAACATTACGACAGTGACGAGTATGTTGTTCGAGAAGGGAAAGCCGGGGATGGAATTTACTTCATATTGGAAGGGGAGGCAGAAGTCTCTGGCTCTGCACCTGCTAATGTAGGAGAGCGTTCTGAGTTCCAGTTGAAGCGATATGATTATTTTGGTCATGGTACAGAAGCATCTGCTCAGTATGCAGATGTAATTGCATTGTCTAAGCTTGAACTCTTAAAATTGTGCCTCTACATGAATTCTCCTACTGAGCTTCTAGTGCTTTGTCTATGGCAACAGTTGACCTGCTTGGTGCTGCCCCAAGATTATTGCAATTTGATGCAGCCAAAATCAATCTGGAGTGCAGATGGACTTGATACATGCTCACTTATGGAACAAATTTTGCATTTAGAACCAATAGAAGTGAACATTTTCCGAGGAATCACCTTGCCAGATGCTCCTAAATTTGGAAAAATATTTGGAGGACAGTTTATTGGGCAGGCACTTGCAGCAGCATCGAAAACTGTTGATTGTCTTAAGATCGTCCATAGTCTGCATGCTTACTTCCTTCTTGTCGGGATTTCAATAGTAATACCGGTTATGTATCAAGTTGAACGTGTACATGACAGGAAAAGTTTCGCTACCCGAAGGGTGGAAGCAATACAAAAAGGGATTGTCGTATTCACATTGTTTGCTTCATTTCAGGCATGCTCTTAA

Network for GWHGAAZE024895

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00027.30	cNMP_binding	34	108	1.10E-06
PF13622.7	4HBT_3	184	262	4.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01068	ACOT1_2_4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Biosynthesis of unsaturated fatty acids	map01040
		Ovarian steroidogenesis	map04913

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.637
	SRR3591706	second leaf	8.112
	SRR3591707	mature leaf	7.195
	SRR3591708	Shoot apex	8.969
	SRR3591709	Stem	6.588
	SRR3591710	White floral bud	3.719
	SRR3591711	White flower	2.145
	SRR3591712	Green floral bud	4.779
	SRR3591713	Yellow flower	0.898
SRP173429	SRR8316895	Juvenile bud stage	2.927
	SRR8316896	Juvenile bud stage	3.186
	SRR8316897	Juvenile bud stage	1.955
	SRR8316894	Third green stage	2.462
	SRR8316900	Third green stage	7.027
	SRR8316901	Third green stage	5.317
	SRR8316898	Complete white stage	0.496
	SRR8316899	Complete white stage	7.876
	SRR8316903	Complete white stage	0.929
	SRR8316902	Silver flowering stage	0.076
	SRR8316904	Silver flowering stage	0.093
	SRR8316905	Silver flowering stage	0.119
	SRR8316906	Gold flowering stage	0.752
	SRR8316907	Gold flowering stage	0.383
	SRR8316908	Gold flowering stage	1.209
SRP132670	SRR6706286	Control	4.095
	SRR6706287	Light intensity 50%	4.981
	SRR6706288	Light intensity 20%	5.467
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.887
	CNS0095593	Slightly white alabastrum(diploid) 2	2.237
	CNS0095594	Slightly white alabastrum(diploid) 3	2.711
	CNS0095595	Whole white alabastrum(diploid) 2	3.354
	CNS0095596	Whole white alabastrum(diploid) 3	1.713
	CNS0095597	Whole white alabastrum(diploid) 4	2.171
	CNS0095598	Silvery flower (diploied) 1	5.712
	CNS0095599	Silvery flower (diploied) 2	2.390
	CNS0095600	Silvery flower (diploied) 3	1.424
	CNS0095601	Golden flower (diploid) 1	3.746
	CNS0095602	Golden flower (diploid) 2	1.860
	CNS0095603	Golden flower (diploid) 3	2.131
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.684
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.870
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.805
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.218
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.332
	CNS0095610	Silvery flower (tetraploid) 1	0.798
	CNS0095611	Silvery flower (tetraploid) 2	1.174
	CNS0095612	Silvery flower (tetraploid) 3	0.427
	CNS0095613	Golden flower (tetraploid) 1	0.289
	CNS0095614	Golden flower (tetraploid) 2	0.338
	CNS0095615	Golden flower (tetraploid) 3	0.291
CRA001975	CRR073297	Stem 1	5.474
	CRR073298	Stem 2	5.006
	CRR073299	Stem 3	2.853
	CRR073300	Leaf 1	5.967
	CRR073301	Leaf 2	5.033
	CRR073302	Leaf 3	6.143
	CRR073303	Juvenile bud 1	1.853
	CRR073304	Juvenile bud 2	2.229
	CRR073305	Juvenile bud 3	3.318
	CRR073306	Third green 1	0.053
	CRR073307	Third green 2	0.126
	CRR073308	Third green 3	0.062
	CRR073309	Second white 1	0.168
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.068
	CRR073315	Gold flowering 1	2.683
	CRR073316	Gold flowering 2	1.508
	CRR073317	Gold flowering 3	1.034
	CRR073318	Tawny withering 1	1.982
	CRR073319	Tawny withering 2	1.877
	CRR073320	Tawny withering 3	4.231