Gene detail

Detail information of GWHGAAZE024884

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP28621.1	0	hypothetical protein JCGZ_14392 [Jatropha curcas]
COG	YP_003108732.1	5E-17	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q8GUH1\|PUB33_ARATH	0	Serine/threonine-protein kinase
trEMBL	tr\|A0A067JXC9\|A0A067JXC9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP28621.1}
TAIR10	AT2G45910.1	1E-144	U-box domain-containing protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51166866	51170863	-
GWHAAZE00000007	mRNA	51166866	51170863	-
GWHAAZE00000007	exon	51170735	51170863	-
GWHAAZE00000007	exon	51169622	51170152	-
GWHAAZE00000007	exon	51167982	51168635	-
GWHAAZE00000007	exon	51166866	51167048	-
GWHAAZE00000007	CDS	51170735	51170863	-
GWHAAZE00000007	CDS	51169622	51170152	-
GWHAAZE00000007	CDS	51167982	51168635	-
GWHAAZE00000007	CDS	51166866	51167048	-

Transcript Sequence
>GWHTAAZE024918 ATGATTAATGAAATAAAGATTGATCTTGAATCTGGTGTAGAAAAGAAAGCGGTTATTGAAGATGAAAATGATTTACGCAATGAAGAGATTAAGAAGATTGAGGATGCAGTAGAACAGATTGTTTCCACAGCTAAAACAAAAGAGGTGTCATATGCCGAAGAATTGAGACGAAGGAAAGAAACTGAGGAAGCATTAGGAAGAAAAACAGAAGAACTCAAAATGATTAAGCAGCAACTGCATGAAATCACAGACAAACTCCACCTTGCCCACGAACAGAAATCAAATCTTGAGACTCAAATTTCAAATTCTGATCAGAGGGTACAAGAGCTGGAGCAGAAGATTCACTCTGCTGTTGAGTTGTTACAGAACCTCAAAAAGGAACGAGACGAGTTACAGGTGGAGCGTGACGATGCACTTAGAGTAGCCGAGGAGCTAAGGAGAAAACAGGAAGAGCAAGCGTCAAGTTCAAGTGGGCCCCAGTTCTTCTCCGAGTTCTCGTTCTTTGAAATTGAAGAAGCAACTAGAAACTTTGACCCGACATTGAAGATTGGTGAAGGAGGTTATGGAAGTATTTATAAAGGTCTCCTTCGTCACACTCAAGTGGCTATAAAGATGCTGCACTCCCACAGCTCTCAAGGACCTTTGGAGTTTCAACAGGAGCCTCGAAGATCGGCTCAACTGCAAGGACAATACTCCCCCACTCTCTTGGCAGACCGAATCCGTATTGCCACAGAGCTCTGTTCTGTTCTAATTTTCCTTCACTCTTGCAGTCCTCACGGTATAATACATGGCGATTTAAAGCCTGCCAACATTCTGCTCGATTCCAACTATGTGAGCAAACTCAGCGACTTTGGAATCTGCAGAGTACTCTCTCGAAACGAGTTATCGAGTAATAACACTACACTTTGCTGCAGAACTGACCCAAAGGGCACTTTTGTGTATATGGACCCTGAATTTTTAGGTACGGGCGAGCTTACTACAAAATCAGACGTGTACTCATTTGGGATTATATTGTTGAGATTGTTGACGGGGAGACCGGCATTGGGGATAATAAAGGAAGTGGAATATGCGTTAGATAAAGGGAATTTGAAGGAGTTGTTGGATCCAACGGCCGGGGATTGGCCGTTTGTGCAGGCTAAACAGTTGGCTCACTTAGCTATCAGTTGCTGTAATAGGAACCGTAGGATCCGGCCTGACTTTGCCTCGGAGGTGTGGCGGGTGCTTGAGCCAATGAGAGGTTCGTGTGGGGCCTCGTCCTTTCGGTTGGGTTCTGCGGAGCGGGTTCCGCACTATTTTATTTGTCCCATTTTTCAGGAAATTATGCAAGATCCAGTTGTAGCTGCAGATGGTTACACCTACGAAGCAGAGGCTCTAAAAGGATGGCTTGATAGTGGCCACGATACATCCCCCATGACAAATATCAAGCTTAAACACTGCAATATTTTGCCCAACCACGCTCTTCGCTCAGCGATCCAAGAATGGCTGCAACAAAAATGA

Network for GWHGAAZE024884

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	241	400	1.50E-24
PF04564.16	U-box	428	498	1.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0016567	biological_process	protein ubiquitination
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.758
	SRR3591706	second leaf	8.340
	SRR3591707	mature leaf	35.690
	SRR3591708	Shoot apex	4.383
	SRR3591709	Stem	8.741
	SRR3591710	White floral bud	17.216
	SRR3591711	White flower	29.286
	SRR3591712	Green floral bud	13.637
	SRR3591713	Yellow flower	21.027
SRP173429	SRR8316895	Juvenile bud stage	16.486
	SRR8316896	Juvenile bud stage	18.852
	SRR8316897	Juvenile bud stage	14.428
	SRR8316894	Third green stage	3.539
	SRR8316900	Third green stage	9.892
	SRR8316901	Third green stage	10.698
	SRR8316898	Complete white stage	7.069
	SRR8316899	Complete white stage	15.932
	SRR8316903	Complete white stage	11.357
	SRR8316902	Silver flowering stage	7.178
	SRR8316904	Silver flowering stage	8.480
	SRR8316905	Silver flowering stage	3.954
	SRR8316906	Gold flowering stage	17.989
	SRR8316907	Gold flowering stage	11.683
	SRR8316908	Gold flowering stage	18.525
SRP132670	SRR6706286	Control	13.048
	SRR6706287	Light intensity 50%	13.111
	SRR6706288	Light intensity 20%	13.612
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.591
	CNS0095593	Slightly white alabastrum(diploid) 2	15.938
	CNS0095594	Slightly white alabastrum(diploid) 3	20.475
	CNS0095595	Whole white alabastrum(diploid) 2	16.178
	CNS0095596	Whole white alabastrum(diploid) 3	6.166
	CNS0095597	Whole white alabastrum(diploid) 4	12.168
	CNS0095598	Silvery flower (diploied) 1	22.686
	CNS0095599	Silvery flower (diploied) 2	28.229
	CNS0095600	Silvery flower (diploied) 3	31.302
	CNS0095601	Golden flower (diploid) 1	33.991
	CNS0095602	Golden flower (diploid) 2	37.639
	CNS0095603	Golden flower (diploid) 3	39.064
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.693
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.252
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.831
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.840
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.398
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.266
	CNS0095610	Silvery flower (tetraploid) 1	19.523
	CNS0095611	Silvery flower (tetraploid) 2	21.940
	CNS0095612	Silvery flower (tetraploid) 3	18.840
	CNS0095613	Golden flower (tetraploid) 1	17.253
	CNS0095614	Golden flower (tetraploid) 2	21.229
	CNS0095615	Golden flower (tetraploid) 3	13.555
CRA001975	CRR073297	Stem 1	14.782
	CRR073298	Stem 2	11.139
	CRR073299	Stem 3	11.363
	CRR073300	Leaf 1	12.022
	CRR073301	Leaf 2	11.661
	CRR073302	Leaf 3	11.000
	CRR073303	Juvenile bud 1	9.573
	CRR073304	Juvenile bud 2	10.828
	CRR073305	Juvenile bud 3	11.641
	CRR073306	Third green 1	17.376
	CRR073307	Third green 2	8.060
	CRR073308	Third green 3	14.455
	CRR073309	Second white 1	10.885
	CRR073310	Second white 2	16.694
	CRR073311	Second white 3	11.646
	CRR073312	Silver flowering 1	7.993
	CRR073313	Silver flowering 2	6.380
	CRR073314	Silver flowering 3	8.454
	CRR073315	Gold flowering 1	14.513
	CRR073316	Gold flowering 2	16.674
	CRR073317	Gold flowering 3	5.890
	CRR073318	Tawny withering 1	18.602
	CRR073319	Tawny withering 2	27.029
	CRR073320	Tawny withering 3	13.472