Detail information of GWHGAAZE024881


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009629838.10PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 4 [Nicotiana tomentosiformis]
Swissprottr|Q9LMM0|GPAT4_ARATH0Glycerol-3-phosphate 2-O-acyltransferase 4
trEMBLtr|A0A068UK18|A0A068UK18_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313|EMBL:CDP08801.1}
TAIR10AT1G01610.10glycerol-3-phosphate acyltransferase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5111440451119733-
GWHAAZE00000007mRNA5111440451119733-
GWHAAZE00000007exon5111955951119733-
GWHAAZE00000007exon5111899851119160-
GWHAAZE00000007exon5111831751118629-
GWHAAZE00000007exon5111440451115273-
GWHAAZE00000007CDS5111955951119733-
GWHAAZE00000007CDS5111899851119160-
GWHAAZE00000007CDS5111831751118629-
GWHAAZE00000007CDS5111440451115273-
Transcript Sequence

Network for GWHGAAZE024881

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12710.8HAD342131.10E-18
PF01553.22Acyltransferase3104074.80E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13508GPAT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerolipid metabolismmap00561
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName
GO:0016746molecular_functiontransferase activity, transferring acyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf84.508
SRR3591706second leaf757.848
SRR3591707mature leaf306.039
SRR3591708Shoot apex229.489
SRR3591709Stem33.615
SRR3591710White floral bud262.685
SRR3591711White flower161.167
SRR3591712Green floral bud481.857
SRR3591713Yellow flower73.517
SRP173429 SRR8316895Juvenile bud stage 112.812
SRR8316896Juvenile bud stage 142.630
SRR8316897Juvenile bud stage 55.782
SRR8316894Third green stage 75.564
SRR8316900Third green stage 315.956
SRR8316901Third green stage 297.460
SRR8316898Complete white stage 70.382
SRR8316899Complete white stage 458.944
SRR8316903Complete white stage 93.024
SRR8316902Silver flowering stage21.767
SRR8316904Silver flowering stage61.248
SRR8316905Silver flowering stage10.053
SRR8316906Gold flowering stage 32.510
SRR8316907Gold flowering stage 17.320
SRR8316908Gold flowering stage 37.366
SRP132670SRR6706286Control499.322
SRR6706287Light intensity 50%496.010
SRR6706288Light intensity 20%531.989
CNP0000432CNS0095592Slightly white alabastrum(diploid) 194.906
CNS0095593Slightly white alabastrum(diploid) 2100.882
CNS0095594Slightly white alabastrum(diploid) 381.520
CNS0095595Whole white alabastrum(diploid) 281.216
CNS0095596Whole white alabastrum(diploid) 362.493
CNS0095597Whole white alabastrum(diploid) 475.886
CNS0095598Silvery flower (diploied) 1126.480
CNS0095599Silvery flower (diploied) 2105.534
CNS0095600Silvery flower (diploied) 366.302
CNS0095601Golden flower (diploid) 176.349
CNS0095602Golden flower (diploid) 264.336
CNS0095603Golden flower (diploid) 360.747
CNS0095604Slightly white alabastrum(tetraploid) 191.210
CNS0095605Slightly white alabastrum(tetraploid) 251.488
CNS0095606Slightly white alabastrum(tetraploid) 3302.976
CNS0095607Whole white alabastrum(tetraploid) 145.258
CNS0095608Whole white alabastrum(tetraploid) 235.207
CNS0095609Whole white alabastrum(tetraploid) 3213.758
CNS0095610Silvery flower (tetraploid) 1111.502
CNS0095611Silvery flower (tetraploid) 278.734
CNS0095612Silvery flower (tetraploid) 359.303
CNS0095613Golden flower (tetraploid) 112.363
CNS0095614Golden flower (tetraploid) 2135.071
CNS0095615Golden flower (tetraploid) 396.845
CRA001975CRR073297Stem 1214.495
CRR073298Stem 2248.010
CRR073299Stem 3159.424
CRR073300Leaf 1414.614
CRR073301Leaf 2435.983
CRR073302Leaf 3297.919
CRR073303Juvenile bud 1194.351
CRR073304Juvenile bud 2181.866
CRR073305Juvenile bud 3295.972
CRR073306Third green 130.625
CRR073307Third green 244.877
CRR073308Third green 3111.686
CRR073309Second white 19.589
CRR073310Second white 219.077
CRR073311Second white 35.625
CRR073312Silver flowering 12.907
CRR073313Silver flowering 25.960
CRR073314Silver flowering 34.067
CRR073315Gold flowering 1138.601
CRR073316Gold flowering 2103.843
CRR073317Gold flowering 3191.990
CRR073318Tawny withering 142.024
CRR073319Tawny withering 210.479
CRR073320Tawny withering 355.003