Gene detail

Detail information of GWHGAAZE024878

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663715.1	0	PREDICTED: origin recognition complex subunit 5 [Vitis vinifera]
Swissprot	tr\|Q6EWX0\|ORC5_ARATH	0	Origin of replication complex subunit 5 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|F6GSP8\|F6GSP8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43303.1}
TAIR10	AT4G29910.1	1E-156	origin recognition complex protein 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51090435	51092778	+
GWHAAZE00000007	mRNA	51090435	51092778	+
GWHAAZE00000007	exon	51090435	51091107	+
GWHAAZE00000007	exon	51091170	51091278	+
GWHAAZE00000007	exon	51091375	51091797	+
GWHAAZE00000007	exon	51092433	51092778	+
GWHAAZE00000007	CDS	51090435	51091107	+
GWHAAZE00000007	CDS	51091170	51091278	+
GWHAAZE00000007	CDS	51091375	51091797	+
GWHAAZE00000007	CDS	51092433	51092778	+

Transcript Sequence
>GWHTAAZE024912 ATGGATAAAGAGGAAAGTCCACAAATTAACAGAAGAACTACGAGATTATCCTCTTCGAACCCCAATTTGAACAATGCAGTCGAAATACCGAAAAATAGTAATGCTCAACCTCTCACACTGGCTGATCTCATGTTTGGTGAGGCACCTTTGAACTTTGACGATTTAGTTTGTAGTTTTCCTGGTAGGGGTACTCAGATTACTGAATTAATACACCTTTTGGGTCCTGTGGATTCTCCGATGATTCCACTCTTTATATACGGAGGTCCATCAACTGGCAAAACGTGCACTGTGCTTCAGATGTTGAAACACCTAAACCGCCCGCTTGTTTATTCGAGTTGTCGTACCTGTTACAATCCCAGGATATTGTTTGAATCTATCCTGAATCAACTTTTGCTTCATAGAAAAGGTGAAGATAATGCCTATTCGAGTGCAAAACGCTGTGAAAAGCCATCTGATTTTGTTAACTTTCTACACGAAGCATTGGCTAGTGTTGTAAATAATCTCAAGGAATATAAGGGGAAATCAAGCTCAACGAAGTCGTCTAGACGCCCCAAAGGAAGGATGTTTTACTTGATAATCGATAATTTGGAGCTTGTTCAAGAGTGGGATAAGCCTTCGAGCATATTGCCATTTCTGTTTAAGCTTTATGATATTTTGAAGATGACTGATATTGGTTATGTAGAGCCGGTTCCTATTTATTTTCCTGATTACACAGAAGATGATCTTCGTAAAATCTTCAAAAGAAACCAAGAAAACCCAAAACTTTATTCATCTTTTCTTGATGTGGTATTGAAGCCTTTCTGTCGAGTAACAAGACGGGTTGATGAATTATCGACTGCCTTGACACAGTTATTTAAAAAATACTGTGAATCCTTAAGTGACACCGGTGTTGCTCCAAATGAAGAAATGAAAAGAAGGTTATTTAGTCATCTTCAACCGCATATTTCGCCTTCTCTAAACGAGATATTCAGGGTTTTGTCTTGGCCTTCCCTTGAAACGGCAGTCAGCAAGGACACAATTAAGCAAAAAGTCAGTTCAAGGAAACTGGGAGTTTCTGAAGCCTTTGATGAGATAGACTTCCATATGTCTATATCTGCAAAGTATCTTCTGATTTCTGCATTCATAGCTTCAAGAAATCCAGCTACTCTTGATGCCTCATTGTTTGATTCAACTGGTGGTTCCAACAGTCGAAAAAGGAAGAGGAAGAGCTCTGATAAGTCGATCGAGCAGAAAGAAGCTAAAGAACAAGAGTTAACCATGAAAGGACCTGGAACTTTCCCATTGGAGAGGTTGTTAGCCATATTTCAATGTATAACATCTGTTGCAGAATATTCACTCGATGAAGAACAAGAGGATGATGGGTTTGGAGGTGAAAGTGGGAATTGTGGACTGATTTCTGATGTTCTTTTACAACTATCAAGTCTTTGCAATGCTAATTTTATCAGCGAAGGAGGAAGCTGTCCATTGGAGGGATCAGCTCGCTACAGATCTACAGTCTCTGAAGATATGGCTCTGCAGGTAATCTTTTCAAGTCCTCGTGTGAAGTCCTAG

Network for GWHGAAZE024878

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13191.7	AAA_16	59	214	3.40E-08
PF14630.7	ORC5_C	232	506	8.00E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02607	ORC5	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0000808	cellular_component	origin recognition complex
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.830
	SRR3591706	second leaf	2.288
	SRR3591707	mature leaf	3.048
	SRR3591708	Shoot apex	4.324
	SRR3591709	Stem	2.928
	SRR3591710	White floral bud	2.093
	SRR3591711	White flower	2.058
	SRR3591712	Green floral bud	5.212
	SRR3591713	Yellow flower	1.069
SRP173429	SRR8316895	Juvenile bud stage	1.991
	SRR8316896	Juvenile bud stage	2.406
	SRR8316897	Juvenile bud stage	2.156
	SRR8316894	Third green stage	1.744
	SRR8316900	Third green stage	3.375
	SRR8316901	Third green stage	2.687
	SRR8316898	Complete white stage	0.651
	SRR8316899	Complete white stage	4.888
	SRR8316903	Complete white stage	2.290
	SRR8316902	Silver flowering stage	0.392
	SRR8316904	Silver flowering stage	1.902
	SRR8316905	Silver flowering stage	0.314
	SRR8316906	Gold flowering stage	0.908
	SRR8316907	Gold flowering stage	0.667
	SRR8316908	Gold flowering stage	0.978
SRP132670	SRR6706286	Control	2.055
	SRR6706287	Light intensity 50%	1.726
	SRR6706288	Light intensity 20%	2.608
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.799
	CNS0095593	Slightly white alabastrum(diploid) 2	0.666
	CNS0095594	Slightly white alabastrum(diploid) 3	0.869
	CNS0095595	Whole white alabastrum(diploid) 2	0.657
	CNS0095596	Whole white alabastrum(diploid) 3	0.820
	CNS0095597	Whole white alabastrum(diploid) 4	0.532
	CNS0095598	Silvery flower (diploied) 1	2.177
	CNS0095599	Silvery flower (diploied) 2	1.430
	CNS0095600	Silvery flower (diploied) 3	2.611
	CNS0095601	Golden flower (diploid) 1	1.649
	CNS0095602	Golden flower (diploid) 2	3.135
	CNS0095603	Golden flower (diploid) 3	2.839
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.632
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.294
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.374
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.340
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.853
	CNS0095610	Silvery flower (tetraploid) 1	1.566
	CNS0095611	Silvery flower (tetraploid) 2	2.496
	CNS0095612	Silvery flower (tetraploid) 3	0.919
	CNS0095613	Golden flower (tetraploid) 1	0.479
	CNS0095614	Golden flower (tetraploid) 2	1.280
	CNS0095615	Golden flower (tetraploid) 3	0.367
CRA001975	CRR073297	Stem 1	1.055
	CRR073298	Stem 2	0.942
	CRR073299	Stem 3	0.290
	CRR073300	Leaf 1	1.039
	CRR073301	Leaf 2	0.971
	CRR073302	Leaf 3	0.438
	CRR073303	Juvenile bud 1	0.164
	CRR073304	Juvenile bud 2	0.445
	CRR073305	Juvenile bud 3	0.494
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.056
	CRR073309	Second white 1	0.012
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.013
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.011
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.565
	CRR073316	Gold flowering 2	0.813
	CRR073317	Gold flowering 3	0.024
	CRR073318	Tawny withering 1	0.620
	CRR073319	Tawny withering 2	0.711
	CRR073320	Tawny withering 3	0.461