Gene detail

Detail information of GWHGAAZE024873

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI40441.3	4.3008E-128	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q84JT7\|ARID1_ARATH	1E-89	AT-rich interactive domain-containing protein 1
trEMBL	tr\|F6I672\|F6I672_VITVI	1E-125	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62468.1}
TAIR10	AT2G46040.1	1E-77	ARID/BRIGHT DNA-binding domain;ELM2 domain protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51000162	51004719	+
GWHAAZE00000007	mRNA	51000162	51004719	+
GWHAAZE00000007	exon	51000162	51000932	+
GWHAAZE00000007	exon	51003811	51004380	+
GWHAAZE00000007	exon	51004657	51004719	+
GWHAAZE00000007	CDS	51000162	51000932	+
GWHAAZE00000007	CDS	51003811	51004380	+
GWHAAZE00000007	CDS	51004657	51004719	+

Transcript Sequence
>GWHTAAZE024907 ATGGCAGGTTGGTCGAAGATAGCAGATGAATCCGCTTTCGATTGCTTCGAAACCCTAAAAAAGCTTCAAACGAACGGATTATTCTCGTTCGATCTTAACAGTAAAGGTGATGAACAAGATAAGCTTCGTTGTTTGTTCAATCAATTTGTATCTGTTTTCTTAAAGAGCATTTGTGGGAGTAATTGTTTAAGGCCTTTACCTGTAATGTTAGGGGATGGAAAATCAGTAGATTTGTTCAGATTATACATTGTAGTGAGAGAAAAAGGTGGATATGAGAATGTTTGTAATAATGGATTTTGGGATTTAGTGGCAAAAGAGGCTCAAATTGGGGATGGTAAAGGTTCAGTTGTGAAATTGGTTTATATAAAGTATTTAGATACATTAGATAAATGGTTACAAAAAGTGAAGTTACAAGGTTATTCCGAGTCAGAATTTAAAGGATTTTTGTCAGAAATTAAGGATGATCAAAATGACAAGGATGTTACTAATAGGGAAATACAGGATGTAATTTTGAAGTCTGGGGATTTGAGTGGAATTGTTGAAGATGAATCAAATGGGAATAGAAAGCGAAAGCGGGAGTGTAATTGGGGATTGCTGGATTGGGTTAAAAGGATTGCAAAGGATCCGTGCCATTTGAGTGTTGGGTGTTTACCGGAAATGTCTAAGTGGAAGGCTTATGGGAGTGACAAGTTGTGGAAGCAAGTTCTATTGGCTAGAGAGGCGATGCTTGTGAAAAGGACTGATTTGAGTGGTGAACAATCTACTTGGCAGAAGCAAAAGATGCATCCATACATGTATGAAGATCACATTGGGTCTGAAAGATCAAGATCGAGCAAGAGGATCCTCTCAGCGAAAGAGCTCCTTTATTTGAAAAGTTCCCAACTACGTCCTTCCTCAGAGGATCACATTGATAATCACGGGCGAAGAAGGATCCCTGTGGGCTCTTATTTTCAAGCCAAAGTACCTGAGTGGACCGGTGGTGAGAATTATGAAAACGACCCTAAATGGCTCGGTACTCGTATTTGGCCCCTGGGAAAAGGAGAACGTGGCAACCGTTTGATTGAAATTGACCGCATCGGAAAAGGACGAACCAGAGCATGTGGCTGTGAGTTCCCGGGTTCGATACAATGCATGAGATTTCACATTGCCGAGAAACGGATGAAGGTGAAGCTTGAGCTGGGCTCAGCCTTTGAACGCTGGAAATTCGACAAGATGGGGGAGGAAGTGGCGCTTTCTTGGACTAAAGAAGAGGAAAAGAAATTCCTGGAAACAGTTAAGCCGAACGAGTGTTTTTGGGAGGAAATGTTGGAGAATTTCCCGGGAAAAAGCAGGGTGGAATTGAGAACAACTTTCCATGATAGGCGTTTGAGACAGGTAAATTTTGGGTTTAAGCGACATGTTTAG

Network for GWHGAAZE024873

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.22	ARID	63	127	8.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.276
	SRR3591706	second leaf	1.670
	SRR3591707	mature leaf	1.802
	SRR3591708	Shoot apex	5.059
	SRR3591709	Stem	3.055
	SRR3591710	White floral bud	2.942
	SRR3591711	White flower	3.076
	SRR3591712	Green floral bud	4.688
	SRR3591713	Yellow flower	1.599
SRP173429	SRR8316895	Juvenile bud stage	3.894
	SRR8316896	Juvenile bud stage	4.654
	SRR8316897	Juvenile bud stage	2.243
	SRR8316894	Third green stage	2.368
	SRR8316900	Third green stage	6.291
	SRR8316901	Third green stage	4.642
	SRR8316898	Complete white stage	0.666
	SRR8316899	Complete white stage	4.846
	SRR8316903	Complete white stage	1.482
	SRR8316902	Silver flowering stage	0.636
	SRR8316904	Silver flowering stage	1.049
	SRR8316905	Silver flowering stage	0.661
	SRR8316906	Gold flowering stage	1.286
	SRR8316907	Gold flowering stage	1.775
	SRR8316908	Gold flowering stage	0.801
SRP132670	SRR6706286	Control	2.658
	SRR6706287	Light intensity 50%	2.502
	SRR6706288	Light intensity 20%	2.990
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.391
	CNS0095593	Slightly white alabastrum(diploid) 2	3.137
	CNS0095594	Slightly white alabastrum(diploid) 3	3.707
	CNS0095595	Whole white alabastrum(diploid) 2	2.587
	CNS0095596	Whole white alabastrum(diploid) 3	3.019
	CNS0095597	Whole white alabastrum(diploid) 4	2.752
	CNS0095598	Silvery flower (diploied) 1	2.418
	CNS0095599	Silvery flower (diploied) 2	1.418
	CNS0095600	Silvery flower (diploied) 3	1.867
	CNS0095601	Golden flower (diploid) 1	1.434
	CNS0095602	Golden flower (diploid) 2	1.822
	CNS0095603	Golden flower (diploid) 3	1.611
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.871
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.629
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.113
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.318
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.155
	CNS0095610	Silvery flower (tetraploid) 1	1.373
	CNS0095611	Silvery flower (tetraploid) 2	1.068
	CNS0095612	Silvery flower (tetraploid) 3	0.917
	CNS0095613	Golden flower (tetraploid) 1	0.742
	CNS0095614	Golden flower (tetraploid) 2	1.278
	CNS0095615	Golden flower (tetraploid) 3	0.609
CRA001975	CRR073297	Stem 1	4.738
	CRR073298	Stem 2	4.431
	CRR073299	Stem 3	4.472
	CRR073300	Leaf 1	4.600
	CRR073301	Leaf 2	3.754
	CRR073302	Leaf 3	2.598
	CRR073303	Juvenile bud 1	2.842
	CRR073304	Juvenile bud 2	2.266
	CRR073305	Juvenile bud 3	2.746
	CRR073306	Third green 1	0.501
	CRR073307	Third green 2	0.137
	CRR073308	Third green 3	0.373
	CRR073309	Second white 1	0.056
	CRR073310	Second white 2	0.788
	CRR073311	Second white 3	0.066
	CRR073312	Silver flowering 1	0.125
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.368
	CRR073315	Gold flowering 1	0.496
	CRR073316	Gold flowering 2	1.026
	CRR073317	Gold flowering 3	0.299
	CRR073318	Tawny withering 1	3.632
	CRR073319	Tawny withering 2	3.074
	CRR073320	Tawny withering 3	2.868