Gene detail

Detail information of GWHGAAZE024867

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP20377.1	0	unnamed protein product [Coffea canephora]
COG	YP_003104067.1	1E-22	serine/threonine protein kinase
Swissprot	tr\|Q40353\|MMK2_MEDSA	0	Mitogen-activated protein kinase homolog MMK2
trEMBL	tr\|A0A068VIE0\|A0A068VIE0_COFCA	0	Mitogen-activated protein kinase {ECO:0000256\|RuleBase:RU361165}
TAIR10	AT4G01370.1	0	MAP kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50912566	50918321	+
GWHAAZE00000007	mRNA	50912566	50918321	+
GWHAAZE00000007	exon	50912566	50912732	+
GWHAAZE00000007	exon	50914129	50914258	+
GWHAAZE00000007	exon	50914851	50914988	+
GWHAAZE00000007	exon	50915861	50916194	+
GWHAAZE00000007	exon	50917125	50917343	+
GWHAAZE00000007	exon	50918149	50918321	+
GWHAAZE00000007	CDS	50912566	50912732	+
GWHAAZE00000007	CDS	50914129	50914258	+
GWHAAZE00000007	CDS	50914851	50914988	+
GWHAAZE00000007	CDS	50915861	50916194	+
GWHAAZE00000007	CDS	50917125	50917343	+
GWHAAZE00000007	CDS	50918149	50918321	+

Transcript Sequence
>GWHTAAZE024901 AAGTCTATGGAGTCTAGCTCTGCTTCATCTGATACTAATATCAAAGGAGTACCCACTCATGGCGGTAAATACGTACAGTACAATGTCTACGGTAACCTCTTCGAAGTTTCCAGAAAGTATGTTCCTCCGATTCGTCCGGTTGGTCGAGGAGCCTACGGCATCGTGTGTGCTGCTATGAACTTGGAGACACGTGAGGAAGTTGCTATTAAGAAAATTGGTAATGCATTTGACAATAGAATAGATGCCAAAAGGACACTAAGGGAAATTAAGCTTCTTCGCCACATGGATCATGAAAATGTTATTGCCATCAAAGACATCATACGGCCTCCATTGAAGGAAAATTTCAATGATGTTTACATTGTCTATGAATTAATGGACACTGATCTTCATCAGATAATTCGTTCTAACCAACAACTCACTGATGATCATTGTCGGTATTTTCTTTACCAACTATTAAGAGGACTCAAATACGTTCACTCTGCACATGTGTTGCATCGCGATCTAAAACCTAGCAATTTACTACTCAATGCAAATTGTGACCTAAAGATCGGAGACTTTGGGCTGGCACGCACCACATCGGAAACTGATTTTATGACTGAGTATGTTGTTACTCGCTGGTACCGGGCCCCGGAATTGCTCCTCAATTGTTCAGAGTACACTGCGGCAATTGATATTTGGTCAGTTGGTTGCATACTTGGTGAAATAATGACCCGGCAACCCCTATTCCCGGGCAAAGATTATGTTCATCAGCTGAGACTTCATCACAGAGACGTGCATTTTGTTCTTTTTCTTTGTCAAAAAAAGCTCATAGGTTCACCAGATGATGCGAGTCTTGGGTTTCTAAGAAGCGACAATGCGAGGAGATATGTAAGGCAGCTACCCCAGTACCCAAGGCAGCACTTTTCTTCTAGATTCCCTAATACCTCTCCTGGTGCTCTTGATTTGCTCGAAAAAATGCTCCTCTTTGACCCTAACAGGCGCATTACAGTTGATGAGGCACTATGCCACCCATACTTAGCACCGCTGCATGATATAAACGAGGAGCCAGTGTGCCCAAGGCCTTTCAGTTTTGATTTCGAGCAGCCATCGTGCACAGAAGAGAATATAAAGGAGCTCATCTGGAGGGAGTCCGTAAAATTCAACCCTGACCCGACTCACTGA

Network for GWHGAAZE024867

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	45	339	7.80E-70

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
K20600	MPK4	MAPK signaling pathway - plant	map04016
K20600	MPK4	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004707	molecular_function	MAP kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.750
	SRR3591706	second leaf	29.075
	SRR3591707	mature leaf	30.971
	SRR3591708	Shoot apex	37.794
	SRR3591709	Stem	58.066
	SRR3591710	White floral bud	29.195
	SRR3591711	White flower	46.812
	SRR3591712	Green floral bud	33.037
	SRR3591713	Yellow flower	39.442
SRP173429	SRR8316895	Juvenile bud stage	22.051
	SRR8316896	Juvenile bud stage	27.866
	SRR8316897	Juvenile bud stage	15.126
	SRR8316894	Third green stage	11.349
	SRR8316900	Third green stage	35.468
	SRR8316901	Third green stage	33.422
	SRR8316898	Complete white stage	12.227
	SRR8316899	Complete white stage	55.403
	SRR8316903	Complete white stage	21.424
	SRR8316902	Silver flowering stage	12.759
	SRR8316904	Silver flowering stage	18.944
	SRR8316905	Silver flowering stage	7.557
	SRR8316906	Gold flowering stage	33.241
	SRR8316907	Gold flowering stage	26.307
	SRR8316908	Gold flowering stage	45.605
SRP132670	SRR6706286	Control	40.144
	SRR6706287	Light intensity 50%	40.638
	SRR6706288	Light intensity 20%	40.583
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.074
	CNS0095593	Slightly white alabastrum(diploid) 2	23.192
	CNS0095594	Slightly white alabastrum(diploid) 3	21.220
	CNS0095595	Whole white alabastrum(diploid) 2	23.725
	CNS0095596	Whole white alabastrum(diploid) 3	18.626
	CNS0095597	Whole white alabastrum(diploid) 4	21.038
	CNS0095598	Silvery flower (diploied) 1	26.512
	CNS0095599	Silvery flower (diploied) 2	27.368
	CNS0095600	Silvery flower (diploied) 3	44.296
	CNS0095601	Golden flower (diploid) 1	34.221
	CNS0095602	Golden flower (diploid) 2	45.951
	CNS0095603	Golden flower (diploid) 3	41.402
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.613
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.797
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.408
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.658
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.194
	CNS0095610	Silvery flower (tetraploid) 1	42.730
	CNS0095611	Silvery flower (tetraploid) 2	54.491
	CNS0095612	Silvery flower (tetraploid) 3	45.969
	CNS0095613	Golden flower (tetraploid) 1	24.562
	CNS0095614	Golden flower (tetraploid) 2	38.487
	CNS0095615	Golden flower (tetraploid) 3	39.922
CRA001975	CRR073297	Stem 1	30.069
	CRR073298	Stem 2	27.539
	CRR073299	Stem 3	34.567
	CRR073300	Leaf 1	34.849
	CRR073301	Leaf 2	36.618
	CRR073302	Leaf 3	35.738
	CRR073303	Juvenile bud 1	38.820
	CRR073304	Juvenile bud 2	34.881
	CRR073305	Juvenile bud 3	40.823
	CRR073306	Third green 1	12.282
	CRR073307	Third green 2	10.355
	CRR073308	Third green 3	13.675
	CRR073309	Second white 1	26.738
	CRR073310	Second white 2	23.835
	CRR073311	Second white 3	16.864
	CRR073312	Silver flowering 1	23.369
	CRR073313	Silver flowering 2	24.985
	CRR073314	Silver flowering 3	19.036
	CRR073315	Gold flowering 1	32.144
	CRR073316	Gold flowering 2	36.558
	CRR073317	Gold flowering 3	31.561
	CRR073318	Tawny withering 1	55.050
	CRR073319	Tawny withering 2	49.463
	CRR073320	Tawny withering 3	44.448