Gene detail

Detail information of GWHGAAZE024864

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009782093.1	9.1528E-155	PREDICTED: 50S ribosomal protein L5, chloroplastic [Nicotiana sylvestris]
COG	YP_007134533.1	2E-81	50S ribosomal protein L5
Swissprot	tr\|O04603\|RK5_ARATH	4E-126	50S ribosomal protein L5, chloroplastic (Precursor)
trEMBL	tr\|M0ZND0\|M0ZND0_SOLTU	3E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400004391}
TAIR10	AT4G01310.1	8E-101	Ribosomal L5P family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50886857	50891174	+
GWHAAZE00000007	mRNA	50886857	50891174	+
GWHAAZE00000007	exon	50886857	50887105	+
GWHAAZE00000007	exon	50889348	50889548	+
GWHAAZE00000007	exon	50890833	50891174	+
GWHAAZE00000007	CDS	50886857	50887105	+
GWHAAZE00000007	CDS	50889348	50889548	+
GWHAAZE00000007	CDS	50890833	50891174	+

Transcript Sequence
>GWHTAAZE024898 ATGGCATCTCCAGCTTTTCTACACTCCTCAGCCTCTCCGTTTCTCAGCCAATTCCCTTCAATTTCAACTACCCATTATTACATCCGGTTACCGGCAGTAAGCCCTAGAAGACTGACTGTGAGGGCTGAGTCAGGGATAATACTGGTGGACAAATCTGAGGCGGAGAAGGTTCATAGGCTTAAGACTAGGTACTTGGAAAAGATTGTTCCGATGTTAAAGGAAGAGTTCTCTTACACCAATATTCACCAGGTTCCAAAAGTTGACAAGATAGTGGTAAACTGTGGCATTGGAGATGCTGCACAGAACTCCAAAGGTTTGGATGCAGCAGTGAATGAATTGGCACTTATTACAGGGCAGAGACCTGTAAAGACCCGAGCCAAGAATGCCATTGCCGCCTTTAAGATTCGAGAAAATCAACCCCTTGGTATTGCCGTCACCCTCAGAGGAAAGGTGATGTACGCATTTCTTGATCGGCTCATCAACTTGGGTCTTCCAAGAACAAGGGATTTCCAAGGTGTTAGCCCTAACAGCTTTGACGGGAATGGCAATTACAGTGTCGGATTGAAAGAACAGAGCGTGTTCCCTGAGATAAGCTACGACTTGATTGGGAAGCCAAGAGGAATGGACGTTTGTATATCAACAACAGCCAAAACAGACAAAGAAGCGCATCGGCTTTTGGCCCTCATGGGAATGCCGTTTAGAGAGGGCACTGTTCAAACGGACGTGAAGAGAAAGAAGAAGCTCAGGTCTCACCATTTTGACTCTAAAGCAAAGCAAAGGTTGAGGCGATAA

Network for GWHGAAZE024864

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00281.20	Ribosomal_L5	80	136	1.10E-24
PF00673.22	Ribosomal_L5_C	140	233	2.40E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02931	RP-L5, MRPL5, rplE	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	101.335
	SRR3591706	second leaf	235.497
	SRR3591707	mature leaf	126.629
	SRR3591708	Shoot apex	220.381
	SRR3591709	Stem	36.898
	SRR3591710	White floral bud	49.265
	SRR3591711	White flower	65.107
	SRR3591712	Green floral bud	65.413
	SRR3591713	Yellow flower	80.839
SRP173429	SRR8316895	Juvenile bud stage	48.478
	SRR8316896	Juvenile bud stage	54.213
	SRR8316897	Juvenile bud stage	39.038
	SRR8316894	Third green stage	25.678
	SRR8316900	Third green stage	89.954
	SRR8316901	Third green stage	67.272
	SRR8316898	Complete white stage	23.909
	SRR8316899	Complete white stage	62.801
	SRR8316903	Complete white stage	32.375
	SRR8316902	Silver flowering stage	16.096
	SRR8316904	Silver flowering stage	21.539
	SRR8316905	Silver flowering stage	13.106
	SRR8316906	Gold flowering stage	39.233
	SRR8316907	Gold flowering stage	48.428
	SRR8316908	Gold flowering stage	56.554
SRP132670	SRR6706286	Control	86.007
	SRR6706287	Light intensity 50%	84.710
	SRR6706288	Light intensity 20%	95.618
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.269
	CNS0095593	Slightly white alabastrum(diploid) 2	43.527
	CNS0095594	Slightly white alabastrum(diploid) 3	32.501
	CNS0095595	Whole white alabastrum(diploid) 2	41.417
	CNS0095596	Whole white alabastrum(diploid) 3	48.418
	CNS0095597	Whole white alabastrum(diploid) 4	26.579
	CNS0095598	Silvery flower (diploied) 1	62.870
	CNS0095599	Silvery flower (diploied) 2	64.631
	CNS0095600	Silvery flower (diploied) 3	73.130
	CNS0095601	Golden flower (diploid) 1	53.664
	CNS0095602	Golden flower (diploid) 2	70.088
	CNS0095603	Golden flower (diploid) 3	69.903
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.874
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.123
	CNS0095609	Whole white alabastrum(tetraploid) 3	78.010
	CNS0095610	Silvery flower (tetraploid) 1	55.131
	CNS0095611	Silvery flower (tetraploid) 2	83.801
	CNS0095612	Silvery flower (tetraploid) 3	74.157
	CNS0095613	Golden flower (tetraploid) 1	35.468
	CNS0095614	Golden flower (tetraploid) 2	41.614
	CNS0095615	Golden flower (tetraploid) 3	36.844
CRA001975	CRR073297	Stem 1	84.512
	CRR073298	Stem 2	75.844
	CRR073299	Stem 3	124.865
	CRR073300	Leaf 1	54.404
	CRR073301	Leaf 2	59.670
	CRR073302	Leaf 3	87.456
	CRR073303	Juvenile bud 1	73.337
	CRR073304	Juvenile bud 2	68.012
	CRR073305	Juvenile bud 3	58.937
	CRR073306	Third green 1	42.601
	CRR073307	Third green 2	28.013
	CRR073308	Third green 3	32.716
	CRR073309	Second white 1	54.446
	CRR073310	Second white 2	37.314
	CRR073311	Second white 3	30.084
	CRR073312	Silver flowering 1	25.477
	CRR073313	Silver flowering 2	29.329
	CRR073314	Silver flowering 3	26.262
	CRR073315	Gold flowering 1	166.258
	CRR073316	Gold flowering 2	178.403
	CRR073317	Gold flowering 3	176.031
	CRR073318	Tawny withering 1	49.672
	CRR073319	Tawny withering 2	36.009
	CRR073320	Tawny withering 3	45.047