Gene detail

Detail information of GWHGAAZE024860

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAB89349.1	0	1-aminocyclopropane-1-carboxylate synthase [Diospyros kaki]
COG	YP_004582080.1	3E-73	1-aminocyclopropane-1-carboxylate deaminase
Swissprot	tr\|Q07262\|1A1C_TOBAC	0	1-aminocyclopropane-1-carboxylate synthase
trEMBL	tr\|Q8S934\|Q8S934_DIOKA	0	1-aminocyclopropane-1-carboxylate synthase {ECO:0000313\|EMBL:BAB89349.1}
TAIR10	AT3G61510.1	0	ACC synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50818093	50821432	+
GWHAAZE00000007	mRNA	50818093	50821432	+
GWHAAZE00000007	exon	50818093	50818266	+
GWHAAZE00000007	exon	50818451	50818582	+
GWHAAZE00000007	exon	50819614	50819774	+
GWHAAZE00000007	exon	50820592	50821432	+
GWHAAZE00000007	CDS	50818093	50818266	+
GWHAAZE00000007	CDS	50818451	50818582	+
GWHAAZE00000007	CDS	50819614	50819774	+
GWHAAZE00000007	CDS	50820592	50821432	+

Transcript Sequence
>GWHTAAZE024894 ATGGCCTTTTCAGGCAAAAATAAGCACCAAGTGCTGCTCTCTAAGATAGCAACCAACGATCAACACGGTGAGAATTCTCCTTACTTTGATGGGTGGAAGGCATATGATAACGATCCGTTTCATCCCATCCGAAACCCTAACGGGGTTATCCAAATGGGACTAGCCGAAAATCAGCTTTCTTTGGATTTGATTGCGGAATGGGCAAAGAAAAATCCTAGGGCATCCATATGTACCAGTGAAGGAGTTAACAAGTTCAAGGATATCTCTAACTTTCAAGACTACCATGGCTTGCCAGAATTCAGAAATGCTGTTGCAAAGTTTATGGGGAGAGTGAGAGGAGGTAGGGTTACATTTGATCCAGATCGTATAGTAATGGGCGGAGGAGCTACAGGAGCTAGCGAGCTGATCATGTTTTGCTTGGCTGACCCCGGGGAAGCATTTTTGGTTCCTACACCTTACTATGCAGCATTTGATAGGGACCTAAGATGGAGAACTGGGGTCCAACTACTTCCAATAAATTGCTATAGCTCCAACAATTTTCAAATCACAAAAGATGCACTTGAAGAAGCATATGAAAATGCCACAAAATCAAACATCAAAGTAAAAGGTTTGATCTTAGCAAACCCATCTAACCCGCTAGGAACCATCTTGGACAAGGATACCCTGAAAACCCTAGTGACTTTCATTAATTGCAAAAACATTCATCTAGTTTGCGATGAAATATACTCGGCCACTGTCTTCAATTCCCCGAATTTCGTAAGTGTCGGAGAGATAATACAAGAAGTTCAATGCAACCACGACCTGATTCACATAATCTATAGTTTATCCAAAGACATGGGTTTGCCTGGTTTCAGAGTTGGCATACTTTATTCATATAATGACGCGGTTGTGACATGTGGAAGGAAAATGTCAAGCTTCGGGTTAGTATCCTCTCAAACGCAACATATGCTTGCTTCAATGCTATCGGACGAGGAGTTTGTGGGGAATTTTCTTGCTGAGAGCTCAAGAAGGCTACGTCAGAGGCACCAGGTCTTTACAGAAGGGCTTGAAGAAGCGAGAATAAATTATTTGAAGAGCAACGCGGGGCTTTTTTGTTGGATGGATTTGCGTTCAATGATGAAAGAAGCTACATTTGAAGGTGAAATGATGCTATGGCGTGTGATTATTCATGAGGTGAAGCTCAACGTGTCTCCTGGCTCTTCTTTTCACTGCTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCGAATATGGATGAGGAGACAATGGAGATTGCGCTTAGAAGGATTCGAACATTGGTCGATCAGTAG

Network for GWHGAAZE024860

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	50	429	6.20E-108

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20772	ACS1_2_6	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.258
	SRR3591711	White flower	0.460
	SRR3591712	Green floral bud	0.318
	SRR3591713	Yellow flower	0.435
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.071
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.039
	SRR8316902	Silver flowering stage	0.307
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.001
	SRR6706287	Light intensity 50%	0.110
	SRR6706288	Light intensity 20%	0.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.032
	CNS0095600	Silvery flower (diploied) 3	0.031
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.033
	CNS0095603	Golden flower (diploid) 3	0.089
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.170
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.597
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.062
	CNS0095610	Silvery flower (tetraploid) 1	0.124
	CNS0095611	Silvery flower (tetraploid) 2	0.059
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.036
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.002
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.057
	CRR073308	Third green 3	0.082
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000