Gene detail

Detail information of GWHGAAZE024827

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009783796.1	0	PREDICTED: long chain acyl-CoA synthetase 4-like [Nicotiana sylvestris]
COG	YP_003120813.1	7E-80	AMP-dependent synthetase and ligase
Swissprot	tr\|Q9T009\|LACS5_ARATH	0	Long chain acyl-CoA synthetase 5
trEMBL	tr\|K4AZW4\|K4AZW4_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g095750.2.1}
TAIR10	AT4G11030.1	0	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50158668	50165933	+
GWHAAZE00000007	mRNA	50158668	50165933	+
GWHAAZE00000007	exon	50158668	50158819	+
GWHAAZE00000007	exon	50159116	50159179	+
GWHAAZE00000007	exon	50159257	50159346	+
GWHAAZE00000007	exon	50160585	50160641	+
GWHAAZE00000007	exon	50160967	50161015	+
GWHAAZE00000007	exon	50161405	50161481	+
GWHAAZE00000007	exon	50161643	50161682	+
GWHAAZE00000007	exon	50161790	50161863	+
GWHAAZE00000007	exon	50162184	50162351	+
GWHAAZE00000007	exon	50162534	50162644	+
GWHAAZE00000007	exon	50162725	50162812	+
GWHAAZE00000007	exon	50162934	50163000	+
GWHAAZE00000007	exon	50163261	50163336	+
GWHAAZE00000007	exon	50163423	50163540	+
GWHAAZE00000007	exon	50164113	50164358	+
GWHAAZE00000007	exon	50164494	50164633	+
GWHAAZE00000007	exon	50164820	50165002	+
GWHAAZE00000007	exon	50165439	50165558	+
GWHAAZE00000007	exon	50165901	50165933	+
GWHAAZE00000007	CDS	50158668	50158819	+
GWHAAZE00000007	CDS	50159116	50159179	+
GWHAAZE00000007	CDS	50159257	50159346	+
GWHAAZE00000007	CDS	50160585	50160641	+
GWHAAZE00000007	CDS	50160967	50161015	+
GWHAAZE00000007	CDS	50161405	50161481	+
GWHAAZE00000007	CDS	50161643	50161682	+
GWHAAZE00000007	CDS	50161790	50161863	+
GWHAAZE00000007	CDS	50162184	50162351	+
GWHAAZE00000007	CDS	50162534	50162644	+
GWHAAZE00000007	CDS	50162725	50162812	+
GWHAAZE00000007	CDS	50162934	50163000	+
GWHAAZE00000007	CDS	50163261	50163336	+
GWHAAZE00000007	CDS	50163423	50163540	+
GWHAAZE00000007	CDS	50164113	50164358	+
GWHAAZE00000007	CDS	50164494	50164633	+
GWHAAZE00000007	CDS	50164820	50165002	+
GWHAAZE00000007	CDS	50165439	50165558	+
GWHAAZE00000007	CDS	50165901	50165933	+

Transcript Sequence
>GWHTAAZE024861 ATGTCACAAAAGAAATTTGTGGTGGAGATCGAGAAGGCAAAGGCTGCCACTGATGGGCAGCCTTCGGTCGGACCAGTTTATCGCAATGTCTTAGCTAAAGATGGATTCCGACCACCTGTCCAAGGCATTCAGAGCTGCTGGGATATTTTCCGTGTGTCGGTGGAGAAATATCCTAGTAACCAAATGCTTGGCCAGCGAGAGATTGTGAATGGAAAGGCAGGTAAATATGTGTGGTTAACCTACAAGGAAGTATATGATACAGTATTGAAGGTTGGAGCTTCCATTCGCAGCTGTCATGTTAAAGAAGGAGCTAGATGTGGAATATACGGCGCCAATTGCTTGAAATGGGTTGTAAGCATGCAGGCCTGCAATGCTCTTGGTCTTCACTGTGTCCCTCTATATGACACTTTAGGTGCTGGAGCAGTGGAGTATATCATTTGTCATGCAGAGATTTCAATTGCTTTTGGAGAAGAGAAAAAAATTTCTGAGGTGCTGAAAACATTTCCAAATACTAGAATATACTTGAAAAGTTACAGCAGAGCAAAAGAGTTTGCTAAATCTTTTGGTTTGGCTATATATTCTTGGGATGAGTTTTTGCAGCTGGGAACAAATGAGCAATTTGACCTTCCAGTCAAGAAGAAAAGCGATATATGTACAATAATGTATACAAGTGGAACAACCGGCGACCCAAAGGGAGTAATGATTTCTAATGAGAACATTCTCTCTATTATTTCTGGAGTAAATCACCATCTAGAGAGTACGACTGAAGAGTTTAATGAGAAAGACGTATTCTTGTCGTATCTTCCTCTAGCACATATATTTGATCGGGTAATTGAAGAATTGTTCATTTCCACTGGCGCCTCAATAGGATTTTGGCATGGGGATGTTAAACTATTGATGGACGACGTAAAAGAGTTAAAACCGACTGTGTTTTGTGCTGTTCCACGTGTTTTAGACCGGATTTATTCAGGTTTGGTGGAGAAGATCTCCTCAGGTGGTCTCCTCAAAAATACATTGTTTAACATTGTTTACTCCTATAAACTGCGTAACATGAGTAAAGGGTACAAGCATTTAGAGGCGGCTCCAAAACTTGACAAAATTGTTTTTAGCAAGGTGAAAGAAGGTCTAGGAGGAAATGTGCGGCTCATTCTATCTGGAGCAGCACCTCTTTCCACTAGCATCGAAACCTTTTTACGAGTTGTCACATGCGCTCATGTTCTGCAAGGATATGGTTTAACTGAAACCTCTGCGGCGTCTTTTGTTGCAAGACCGGATGAACTATCAATGATCGGTACCGTGGGACCTCCATTGCCGAACGTGGACGTGCGTTTAGAATCTGTCCCGGAGATGGGCTACGACTCCCTGTGCAGCACCCCACGTGGAGAAATATGCATACGCGGAAATTCCTTGTTCACAGGTTACTACAAACGCGAAGACCTCACCAAAGAGGTTATGGTTGATGGATGGTTTCACACAGGGGATATTGGTGAGTGGCAACCGGATGGGAGCATGAAAATTATTGACCGCAAGAAAAATATATTCAAGCTTTCGCAAGGAGAATATGTGTCAGTTGAGCATCTGGAGGGAATTTACTCGCTTGTTTCCTGTATTGATTCGATATGGATATATGGGAGCAGCTATGAGTCCTTCCTTGTTGCTGTTGCCAATCCCAATAAAGAATCTCTTGAATCTTGGGCTCAAGACAATGGAGTGATTGGGGATTTTAATAGTATCTGTGAAAATCCCAAGGCAAATGCTTATATCCTGGGAGAGCTCACCAAGATTGCAAAACAAAACAAGGTAAAAGGTTTTGAGTTGATTAAAGCTGTGCGTCTTGACCCTATACCATTCGACATGGATCGTGATCTTCTCACTCCAACTTACAAGAAAAAGAGGTCCAACTTCCTCAAGTACTATCAGGTTGTTGGCAGCACCAATTTGCTTAAAGCTTGA

Network for GWHGAAZE024827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.29	AMP-binding	69	517	7.80E-100

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.175
	SRR3591706	second leaf	7.986
	SRR3591707	mature leaf	0.532
	SRR3591708	Shoot apex	2.272
	SRR3591709	Stem	5.626
	SRR3591710	White floral bud	4.414
	SRR3591711	White flower	0.673
	SRR3591712	Green floral bud	1.192
	SRR3591713	Yellow flower	0.503
SRP173429	SRR8316895	Juvenile bud stage	0.565
	SRR8316896	Juvenile bud stage	1.816
	SRR8316897	Juvenile bud stage	0.273
	SRR8316894	Third green stage	0.496
	SRR8316900	Third green stage	1.930
	SRR8316901	Third green stage	1.022
	SRR8316898	Complete white stage	0.082
	SRR8316899	Complete white stage	1.890
	SRR8316903	Complete white stage	0.411
	SRR8316902	Silver flowering stage	0.433
	SRR8316904	Silver flowering stage	1.353
	SRR8316905	Silver flowering stage	0.437
	SRR8316906	Gold flowering stage	2.706
	SRR8316907	Gold flowering stage	2.539
	SRR8316908	Gold flowering stage	2.873
SRP132670	SRR6706286	Control	1.448
	SRR6706287	Light intensity 50%	1.843
	SRR6706288	Light intensity 20%	1.919
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.769
	CNS0095593	Slightly white alabastrum(diploid) 2	1.136
	CNS0095594	Slightly white alabastrum(diploid) 3	0.826
	CNS0095595	Whole white alabastrum(diploid) 2	4.784
	CNS0095596	Whole white alabastrum(diploid) 3	2.340
	CNS0095597	Whole white alabastrum(diploid) 4	9.768
	CNS0095598	Silvery flower (diploied) 1	3.004
	CNS0095599	Silvery flower (diploied) 2	4.025
	CNS0095600	Silvery flower (diploied) 3	1.312
	CNS0095601	Golden flower (diploid) 1	1.572
	CNS0095602	Golden flower (diploid) 2	1.174
	CNS0095603	Golden flower (diploid) 3	0.890
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.406
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.671
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.283
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.366
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.738
	CNS0095610	Silvery flower (tetraploid) 1	0.542
	CNS0095611	Silvery flower (tetraploid) 2	0.827
	CNS0095612	Silvery flower (tetraploid) 3	3.244
	CNS0095613	Golden flower (tetraploid) 1	0.889
	CNS0095614	Golden flower (tetraploid) 2	0.371
	CNS0095615	Golden flower (tetraploid) 3	1.909
CRA001975	CRR073297	Stem 1	0.520
	CRR073298	Stem 2	0.926
	CRR073299	Stem 3	0.950
	CRR073300	Leaf 1	1.512
	CRR073301	Leaf 2	0.632
	CRR073302	Leaf 3	0.886
	CRR073303	Juvenile bud 1	2.484
	CRR073304	Juvenile bud 2	2.329
	CRR073305	Juvenile bud 3	0.821
	CRR073306	Third green 1	0.988
	CRR073307	Third green 2	1.712
	CRR073308	Third green 3	1.756
	CRR073309	Second white 1	0.216
	CRR073310	Second white 2	0.465
	CRR073311	Second white 3	0.945
	CRR073312	Silver flowering 1	2.097
	CRR073313	Silver flowering 2	2.106
	CRR073314	Silver flowering 3	0.607
	CRR073315	Gold flowering 1	3.150
	CRR073316	Gold flowering 2	1.375
	CRR073317	Gold flowering 3	1.055
	CRR073318	Tawny withering 1	39.668
	CRR073319	Tawny withering 2	11.874
	CRR073320	Tawny withering 3	49.091