Gene detail

Detail information of GWHGAAZE024815

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CCG06554.1	0	E3 ubiquitin ligase [Lotus japonicus]
Swissprot	tr\|Q84JL3\|SINA3_ARATH	0	E3 ubiquitin-protein ligase SINAT3
trEMBL	tr\|H8WVC6\|H8WVC6_LOTJA	0	E3 ubiquitin-protein ligase {ECO:0000256\|RuleBase:RU201113}
TAIR10	AT3G61790.1	7E-156	Protein with RING/U-box and TRAF-like domains

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50009541	50012355	+
GWHAAZE00000007	mRNA	50009541	50012355	+
GWHAAZE00000007	exon	50009541	50009723	+
GWHAAZE00000007	exon	50010716	50011102	+
GWHAAZE00000007	exon	50011993	50012355	+
GWHAAZE00000007	CDS	50009541	50009723	+
GWHAAZE00000007	CDS	50010716	50011102	+
GWHAAZE00000007	CDS	50011993	50012355	+

Transcript Sequence
>GWHTAAZE024849 ATGGATTTGGATAGCATTGAATGCATATCATCCTCTGATGGAATGGAAGAAGATGAGATCCATCATCATCTTCATTCTCAGTTATCTGCTTCCAAGATTCGAAGTAATCATCCGATGACTAGTGTCCATGAACTTCTCGAATGCCCTGTTTGTACCAATTCAATGTACCCTCCAATTCACCAGTGTCACAACGGACACACACTCTGTTCGACATGTAAAGCTCGGGTACACAACCGATGTCCCACTTGTAGACAGGAGCTGGGTGATATAAGGTGTCTGGCATTAGAAAAAGTAGCTGAATCACTTGACCTGCCTTGCAAGTACTGCACCCTGGGGTGCCCCGAGATATTTCCCTATTACAGCAAGCTGAAACACGAGGCGGTTTGTAACTTTAGACCATACAATTGTCCCTATGCTGGATCCGAGTGCTCAGTTGTAGGGGATATACCATACCTAGTAGAGCATCTGAGGGATGATCACAAGGTAGACATGCACTCTGGATGCACTTTCAACCATCGTTATGTCAAATCTAATCCCCGTGAAGTTGAAAATGCCACCTGGATGCTAACTGTGTTTCATTGTTTCGGTCAGTACTTTTGTCTCCACTTTGAAGCTTTTCAGCTGGGGATGGCTCCGGTTTATATGGCGTTCCTACGATTCATGGGTGACGAGAATGACGCAAGAAACTACAGCTATAGCTTGGAGGTTGGAGGGAATGGGCGAAAACTTATATGGGAGGGTACACCAAGAAGCATAAGGGATAGTCACAAGAAGGTTAGGGACAGTCATGATGGCCTCATTATACAGCGTAATATGGCACTTTTCTTTTCTGGCGGAGATAGGAAAGAGCTCAAGTTGAGAGTTACGGGCCGGATTTGGAAGGAACAGCAGAACCCCGATGGGGCTACTTGCATGCCCAGCCTCTGTAGTTAA

Network for GWHGAAZE024815

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03145.17	Sina	90	289	6.60E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04506	SIAH1	Ubiquitin mediated proteolysis	map04120
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0007275	biological_process	multicellular organism development
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.372
	SRR3591706	second leaf	11.836
	SRR3591707	mature leaf	13.774
	SRR3591708	Shoot apex	17.236
	SRR3591709	Stem	21.655
	SRR3591710	White floral bud	56.979
	SRR3591711	White flower	20.847
	SRR3591712	Green floral bud	45.298
	SRR3591713	Yellow flower	17.062
SRP173429	SRR8316895	Juvenile bud stage	10.368
	SRR8316896	Juvenile bud stage	17.252
	SRR8316897	Juvenile bud stage	5.748
	SRR8316894	Third green stage	7.958
	SRR8316900	Third green stage	31.269
	SRR8316901	Third green stage	29.607
	SRR8316898	Complete white stage	8.380
	SRR8316899	Complete white stage	22.522
	SRR8316903	Complete white stage	11.293
	SRR8316902	Silver flowering stage	6.272
	SRR8316904	Silver flowering stage	9.255
	SRR8316905	Silver flowering stage	3.626
	SRR8316906	Gold flowering stage	13.114
	SRR8316907	Gold flowering stage	16.624
	SRR8316908	Gold flowering stage	11.849
SRP132670	SRR6706286	Control	25.886
	SRR6706287	Light intensity 50%	28.180
	SRR6706288	Light intensity 20%	27.710
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.663
	CNS0095593	Slightly white alabastrum(diploid) 2	22.606
	CNS0095594	Slightly white alabastrum(diploid) 3	29.838
	CNS0095595	Whole white alabastrum(diploid) 2	52.152
	CNS0095596	Whole white alabastrum(diploid) 3	54.953
	CNS0095597	Whole white alabastrum(diploid) 4	61.387
	CNS0095598	Silvery flower (diploied) 1	15.392
	CNS0095599	Silvery flower (diploied) 2	15.824
	CNS0095600	Silvery flower (diploied) 3	15.489
	CNS0095601	Golden flower (diploid) 1	14.542
	CNS0095602	Golden flower (diploid) 2	14.764
	CNS0095603	Golden flower (diploid) 3	14.879
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.449
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.494
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.819
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.896
	CNS0095608	Whole white alabastrum(tetraploid) 2	85.220
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.759
	CNS0095610	Silvery flower (tetraploid) 1	16.463
	CNS0095611	Silvery flower (tetraploid) 2	15.970
	CNS0095612	Silvery flower (tetraploid) 3	21.717
	CNS0095613	Golden flower (tetraploid) 1	11.817
	CNS0095614	Golden flower (tetraploid) 2	10.656
	CNS0095615	Golden flower (tetraploid) 3	13.567
CRA001975	CRR073297	Stem 1	27.010
	CRR073298	Stem 2	30.214
	CRR073299	Stem 3	29.813
	CRR073300	Leaf 1	43.466
	CRR073301	Leaf 2	37.832
	CRR073302	Leaf 3	29.733
	CRR073303	Juvenile bud 1	38.903
	CRR073304	Juvenile bud 2	33.624
	CRR073305	Juvenile bud 3	21.421
	CRR073306	Third green 1	19.816
	CRR073307	Third green 2	24.303
	CRR073308	Third green 3	22.420
	CRR073309	Second white 1	15.716
	CRR073310	Second white 2	21.022
	CRR073311	Second white 3	14.377
	CRR073312	Silver flowering 1	17.851
	CRR073313	Silver flowering 2	17.456
	CRR073314	Silver flowering 3	11.766
	CRR073315	Gold flowering 1	25.204
	CRR073316	Gold flowering 2	25.318
	CRR073317	Gold flowering 3	20.944
	CRR073318	Tawny withering 1	27.986
	CRR073319	Tawny withering 2	29.160
	CRR073320	Tawny withering 3	29.758