Detail information of GWHGAAZE024802


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010100694.11.1771E-128Ras-related protein RABA3 [Morus notabilis]
COGYP_008431664.13E-24hypothetical protein N186_01315
Swissprottr|Q9LNK1|RABA3_ARATH4E-107Ras-related protein RABA3
trEMBLtr|W9S2E4|W9S2E4_9ROSA4E-129Ras-related protein RABA3 {ECO:0000313|EMBL:EXB83856.1}
TAIR10AT1G01200.13E-82RAB GTPase homolog A3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4966861849671208-
GWHAAZE00000007mRNA4966861849671208-
GWHAAZE00000007exon4966861849669071-
GWHAAZE00000007exon4967090149671208-
GWHAAZE00000007CDS4967090149671208-
GWHAAZE00000007CDS4966861849669071-
Transcript Sequence

Network for GWHGAAZE024802

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras442049.10E-59
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.204
SRR3591706second leaf6.079
SRR3591707mature leaf1.178
SRR3591708Shoot apex11.796
SRR3591709Stem14.826
SRR3591710White floral bud2.279
SRR3591711White flower4.942
SRR3591712Green floral bud1.826
SRR3591713Yellow flower2.667
SRP173429 SRR8316895Juvenile bud stage 8.987
SRR8316896Juvenile bud stage 9.031
SRR8316897Juvenile bud stage 2.222
SRR8316894Third green stage 3.511
SRR8316900Third green stage 8.810
SRR8316901Third green stage 8.014
SRR8316898Complete white stage 1.228
SRR8316899Complete white stage 8.264
SRR8316903Complete white stage 2.447
SRR8316902Silver flowering stage2.346
SRR8316904Silver flowering stage3.547
SRR8316905Silver flowering stage1.515
SRR8316906Gold flowering stage 5.622
SRR8316907Gold flowering stage 7.030
SRR8316908Gold flowering stage 5.086
SRP132670SRR6706286Control6.326
SRR6706287Light intensity 50%8.345
SRR6706288Light intensity 20%9.347
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.423
CNS0095593Slightly white alabastrum(diploid) 215.038
CNS0095594Slightly white alabastrum(diploid) 312.163
CNS0095595Whole white alabastrum(diploid) 210.423
CNS0095596Whole white alabastrum(diploid) 36.552
CNS0095597Whole white alabastrum(diploid) 47.237
CNS0095598Silvery flower (diploied) 16.060
CNS0095599Silvery flower (diploied) 27.559
CNS0095600Silvery flower (diploied) 31.584
CNS0095601Golden flower (diploid) 17.003
CNS0095602Golden flower (diploid) 24.467
CNS0095603Golden flower (diploid) 33.522
CNS0095604Slightly white alabastrum(tetraploid) 17.073
CNS0095605Slightly white alabastrum(tetraploid) 26.239
CNS0095606Slightly white alabastrum(tetraploid) 311.131
CNS0095607Whole white alabastrum(tetraploid) 16.148
CNS0095608Whole white alabastrum(tetraploid) 22.223
CNS0095609Whole white alabastrum(tetraploid) 35.028
CNS0095610Silvery flower (tetraploid) 11.370
CNS0095611Silvery flower (tetraploid) 22.661
CNS0095612Silvery flower (tetraploid) 31.352
CNS0095613Golden flower (tetraploid) 12.848
CNS0095614Golden flower (tetraploid) 22.136
CNS0095615Golden flower (tetraploid) 32.219
CRA001975CRR073297Stem 115.380
CRR073298Stem 220.067
CRR073299Stem 318.192
CRR073300Leaf 111.547
CRR073301Leaf 210.866
CRR073302Leaf 313.158
CRR073303Juvenile bud 16.441
CRR073304Juvenile bud 27.474
CRR073305Juvenile bud 37.519
CRR073306Third green 12.906
CRR073307Third green 23.227
CRR073308Third green 31.433
CRR073309Second white 12.603
CRR073310Second white 21.028
CRR073311Second white 30.171
CRR073312Silver flowering 10.249
CRR073313Silver flowering 20.459
CRR073314Silver flowering 30.450
CRR073315Gold flowering 117.284
CRR073316Gold flowering 29.022
CRR073317Gold flowering 36.283
CRR073318Tawny withering 131.595
CRR073319Tawny withering 224.399
CRR073320Tawny withering 340.761