Gene detail

Detail information of GWHGAAZE024793

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588677.1	0	PREDICTED: CDPK-related kinase 3 [Nicotiana tomentosiformis]
COG	YP_007468874.1	3E-25	serine/threonine protein kinase
Swissprot	tr\|Q9ZUZ2\|CAMK3_ARATH	0	CDPK-related kinase 3
trEMBL	tr\|A0A068ULZ8\|A0A068ULZ8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313\|EMBL:CDP08633.1}
TAIR10	AT2G46700.1	0	CDPK-related kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	49579010	49586520	+
GWHAAZE00000007	mRNA	49579010	49586520	+
GWHAAZE00000007	exon	49579010	49579579	+
GWHAAZE00000007	exon	49580184	49580254	+
GWHAAZE00000007	exon	49582123	49582281	+
GWHAAZE00000007	exon	49582588	49582629	+
GWHAAZE00000007	exon	49582898	49583006	+
GWHAAZE00000007	exon	49583169	49583247	+
GWHAAZE00000007	exon	49583362	49583658	+
GWHAAZE00000007	exon	49583867	49583976	+
GWHAAZE00000007	exon	49585459	49585566	+
GWHAAZE00000007	exon	49585747	49585809	+
GWHAAZE00000007	exon	49586081	49586248	+
GWHAAZE00000007	exon	49586386	49586520	+
GWHAAZE00000007	CDS	49579010	49579579	+
GWHAAZE00000007	CDS	49580184	49580254	+
GWHAAZE00000007	CDS	49582123	49582281	+
GWHAAZE00000007	CDS	49582588	49582629	+
GWHAAZE00000007	CDS	49582898	49583006	+
GWHAAZE00000007	CDS	49583169	49583247	+
GWHAAZE00000007	CDS	49583362	49583658	+
GWHAAZE00000007	CDS	49583867	49583976	+
GWHAAZE00000007	CDS	49585459	49585566	+
GWHAAZE00000007	CDS	49585747	49585809	+
GWHAAZE00000007	CDS	49586081	49586248	+
GWHAAZE00000007	CDS	49586386	49586520	+

Transcript Sequence
>GWHTAAZE024827 ATGGGGCAGTGCTACGGTAAGACTAGTCCTACTTCTGACGACAACAATGGCCCCACCACCATAATCCACGCAGGTGGTGGCGATCTTCCACATCGCTCTCCGCTTCCATCTTCAGCTAATAACGGCGCCGTCAACGTTCCGTCTGTGAAGAACACGCCCGCGCGATCATCGGCGACAAGTCCGTGGCCTAGTCCCTATCCTCACGGCTCGGCGACGAGTCCTCTGCCAGGGGGAGTGTCTCCGTCGCCGGCGAGGTCGACGCCGAGGAGGTTTTTCAAGAGGCCGTTCCCGCCTCCTTCGCCGGCGAAGCACATCAAGGCTTCGCTGGCGAGGCGGTTCGGTAAGCCACGGGAGGGCACGATCCCCGAGGACGGTGGTGCCACCGAGCCTCCTCCTGCTGCTGCTGATCATCTCGATAAGAACTTCGGGTACAATAAGAATTTCGGTGCCAGGTATGAACTGGGGAAGGAGATAGGGAGAGGGCATTTTGGTCATACCTGCCATGCCAAGGGCAGGAAAGGAGACCTCAGGGACCAAGCTGTTGCTGTCAAGATCATTTCCAAATCAAAGTATTATAAATTGGCTCTTGGTTATTATACCCCTAGGCTGGGATCTCGACAGCCCCTTGCGTTCGCAATCCGCTGTATCTTTACGATCTCTTTTTCACAGATGACAACAGCTATATCAATTGAAGACGTTCGTAGAGAAGTAAAAATATTGAAAGCTTTATCAGGGCATAAGCATTTGGTCAAATTCTATGATGCATGTGAGGATGCCAACAACGTTTACATAGTCATGGAATTGTGTGAAGGTGGGGAGTTACTTGACAGAATATTGTCGAGAGGTGGAAGATACACTGAAGAGGATGCAAAGCTTATCATTGTTCAAATTTTAAGTGTGGTTGCATTTTGTCATCTTCAAGGTGTTGTGCACCGTGACTTAAAGCCTGAGAATTTCCTCTTCACCTCTAGAAATGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTTTCTGACTTTATCAGACCAGAGGAAAGACTTAATGACATAGTTGGAAGTGCATACTATGTAGCCCCAGAAGTCCTCCACAGATCTTATAGTCTGGAAGCAGATATTTGGAGCATTGGGGTTATCACCTATATTTTGTTATGTGGAAGCAGACCATTCTGGGCTAGAACAGAATCTGGAATCTTTCGTGCAGTACTAAGAGCTGACCCTAATTTTGATGATATCCCTTGGCCTTCTGTTTCACCAGAAGCCAAGGACTTTGTTAAAAGGCTTTTAAACAAGGACTACAGGAAAAGGATGACTGCTGCTCAAGCTCTGACACACCCATGGTTGCGGAGTGAAAACCACCCTATTCCTTTAGATATATTAATCTACAAGTTAGTCAAGTCATACCTTCATGCTTCACCATTCAAACGTGCAGCCCTAAAGGCACTCTCAAAAGCATTAACAGAGGACGAATTGGTTTATCTTAGAGCTCAATTTATGCTTATAGAACCTAATAAAGATGGGCGTGTCGCTCTTGATAACTTCAGAATGGCTCTTCTGCGAAATGGAACTGATGCGATGAAGGAATCAAGGGTTCCGGATATTCTTAACATGATGGGGCCACTCTCTTATAGGAAGATGGACTTTGAAGAGTTTTGTGCAGCTGCAATAAGCACATATCAACTGGAAGCTGTTGAAGGGTGGGAGCATATTGCATCTACAGCATTTGAGCATTTTGAACAAGAGGGCAACCGAGTTATCTCAGTAGAGGAATTGGCTCGGGAACTGAATGTTGGCCCTACGGCTCATTCGATTCTGAAAGACTGGATAAGAAATGATGGGAAACTCAGTTTGCTTGGATATACCAAATTTTTGCATGGGGTGACTCTTCGCAGCTCAAATACGAGGCACCAGTAG

Network for GWHGAAZE024793

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	223	447	1.50E-63

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.426
	SRR3591706	second leaf	11.763
	SRR3591707	mature leaf	10.867
	SRR3591708	Shoot apex	15.413
	SRR3591709	Stem	18.557
	SRR3591710	White floral bud	31.145
	SRR3591711	White flower	38.656
	SRR3591712	Green floral bud	24.019
	SRR3591713	Yellow flower	43.707
SRP173429	SRR8316895	Juvenile bud stage	14.290
	SRR8316896	Juvenile bud stage	22.817
	SRR8316897	Juvenile bud stage	10.827
	SRR8316894	Third green stage	7.061
	SRR8316900	Third green stage	17.499
	SRR8316901	Third green stage	21.823
	SRR8316898	Complete white stage	13.809
	SRR8316899	Complete white stage	30.262
	SRR8316903	Complete white stage	24.461
	SRR8316902	Silver flowering stage	19.337
	SRR8316904	Silver flowering stage	22.408
	SRR8316905	Silver flowering stage	11.039
	SRR8316906	Gold flowering stage	48.254
	SRR8316907	Gold flowering stage	41.281
	SRR8316908	Gold flowering stage	44.389
SRP132670	SRR6706286	Control	16.043
	SRR6706287	Light intensity 50%	16.737
	SRR6706288	Light intensity 20%	16.769
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.904
	CNS0095593	Slightly white alabastrum(diploid) 2	12.475
	CNS0095594	Slightly white alabastrum(diploid) 3	13.725
	CNS0095595	Whole white alabastrum(diploid) 2	12.075
	CNS0095596	Whole white alabastrum(diploid) 3	10.608
	CNS0095597	Whole white alabastrum(diploid) 4	10.452
	CNS0095598	Silvery flower (diploied) 1	12.004
	CNS0095599	Silvery flower (diploied) 2	13.494
	CNS0095600	Silvery flower (diploied) 3	35.084
	CNS0095601	Golden flower (diploid) 1	14.236
	CNS0095602	Golden flower (diploid) 2	33.211
	CNS0095603	Golden flower (diploid) 3	35.605
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.917
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.197
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.781
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.242
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.048
	CNS0095610	Silvery flower (tetraploid) 1	28.633
	CNS0095611	Silvery flower (tetraploid) 2	27.325
	CNS0095612	Silvery flower (tetraploid) 3	40.022
	CNS0095613	Golden flower (tetraploid) 1	21.380
	CNS0095614	Golden flower (tetraploid) 2	26.042
	CNS0095615	Golden flower (tetraploid) 3	38.712
CRA001975	CRR073297	Stem 1	20.442
	CRR073298	Stem 2	15.832
	CRR073299	Stem 3	15.425
	CRR073300	Leaf 1	18.622
	CRR073301	Leaf 2	15.926
	CRR073302	Leaf 3	12.924
	CRR073303	Juvenile bud 1	12.822
	CRR073304	Juvenile bud 2	13.269
	CRR073305	Juvenile bud 3	12.096
	CRR073306	Third green 1	24.061
	CRR073307	Third green 2	20.989
	CRR073308	Third green 3	20.812
	CRR073309	Second white 1	11.892
	CRR073310	Second white 2	27.709
	CRR073311	Second white 3	26.188
	CRR073312	Silver flowering 1	21.768
	CRR073313	Silver flowering 2	16.371
	CRR073314	Silver flowering 3	19.735
	CRR073315	Gold flowering 1	6.088
	CRR073316	Gold flowering 2	10.941
	CRR073317	Gold flowering 3	4.304
	CRR073318	Tawny withering 1	20.926
	CRR073319	Tawny withering 2	21.824
	CRR073320	Tawny withering 3	20.220