Gene detail

Detail information of GWHGAAZE024792

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004306627.1	2.0756E-145	PREDICTED: transcription factor MYC2-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|O23090\|BH014_ARATH	1E-80	Transcription factor bHLH14
trEMBL	tr\|B9GR68\|B9GR68_POPTR	8E-154	Basic helix-loop-helix family protein {ECO:0000313\|EMBL:EEE80705.1}
TAIR10	AT4G00870.1	2E-65	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	49528594	49530154	-
GWHAAZE00000007	mRNA	49528594	49530154	-
GWHAAZE00000007	exon	49528594	49529261	-
GWHAAZE00000007	exon	49529374	49530154	-
GWHAAZE00000007	CDS	49529374	49530154	-
GWHAAZE00000007	CDS	49528594	49529261	-

Transcript Sequence
>GWHTAAZE024826 ATGGATGACTTAGTTCTCTCCTCTTCTTCCTCTTCTTCAGTACTCTCACTCCCTCAAGAACACCCTTTTTTAAACAACCACCACCACCTTCAACAAAGGCTCCAGTTCTTCATTGAAACCCAACCAGATTCTTGGTCTTATGCCATTTTCTGGCAAACAACCCCAAATGACCAAGCTGCCCCTCATGATGATCATGAACAGATCTATTTATCATGGGGAGATGGCCATTTTCAAGGCACTACTACCGCCAGCTGCAAAGACCGCCATCACCCCTCACATACCGGAATATCATTCCAGCAGCAGTCGGGGGTGGACCACCGGAAAATGTCCACCACCAGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAATCCTCATCAATGGCAACAACCCAGATTTTGAGGGCTCCATGGACGGCTGCGATGTAGCCAACCCCGAATGGTTCTACGTGATGTCGTTAACGAGATCCTTCTCCCCTGGGGAGGGTGTTACGGGTAAGGCCTTCAGTTCCAATGCCATGGTTTGGCTAACCGGAGCTGATCAACTTCAGTTTTATAACTGCGAAAGGGCCAAAGAAGCTCAAATTCACGGCATTAACACCCTTGTTTGCATCCCAACCTCTACTGGTGTTCTTGAATTGGGATCCAGTCTTACTATCAAAGAAAACTGGGGTTTAGTCGAACAAGCTAAATCCTTGTTCGCTTCCTCCTCCTCCTCTGATCTAAACAACAACAACAACAACAACAACAACAACAACAACAACCAGCAAAACCCTGGGGATCAGTTTGTTGTTAGTGATCAATTTGTGGAGACAAGAAAACCAGGTGGTAAGAAGAGAGGGAGAAAGCCGTGCCTGGGGAGGGACACACCATTAAATCACGTGGAGGCGGAGAGACAGAGGCGAGAGAAGCTCAACCACCGGTTCTACGCGCTCAGGTCAGTGGTCCCGAACGTGTCGAGGATGGACAAGGCGTCTCTCTTAGCCGATGCGGTCTGCTACATCAACCAATTGAAAGCGAAAGTGGACAATCTAGAGGCCCAACTCGAAGCTAGTAGGGACTATAATTCATCAATATCCATTAAGAAAATAGAAGTAGTTAAGCCAGAACTGGTCGAGTCGTCAACGGATAACCACAGCACCACCACGACGACGACGACGACGTCCGTGGTGGATCAGATAAGGCCAACTACAATTAATTATAATCCAATTGAAGTAGAGGTGAAGATAGTGGGGTCGGACGCCATGATAAGGGTTCAATCGGAGAACGCTAATTATCCACCGGCCAAGCTGATGAACTCGCTGCGTGAGCTAGAGCTACAGGTGCACCACGCCAGCATGTCCACCATTAATGACCTAATGCTTCAAGATGTTGTCATTAGGGTTCCCGACGGGCTGAGGAGCGAAGATGTACTCAAAGCTGCACTTCTTAAAGGATTCTTAGATTAG

Network for GWHGAAZE024792

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.7	bHLH-MYC_N	30	234	5.80E-48
PF00010.27	HLH	293	339	2.50E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.243
	SRR3591706	second leaf	8.960
	SRR3591707	mature leaf	2.600
	SRR3591708	Shoot apex	44.490
	SRR3591709	Stem	2.216
	SRR3591710	White floral bud	10.786
	SRR3591711	White flower	7.009
	SRR3591712	Green floral bud	1.846
	SRR3591713	Yellow flower	0.173
SRP173429	SRR8316895	Juvenile bud stage	22.361
	SRR8316896	Juvenile bud stage	9.354
	SRR8316897	Juvenile bud stage	5.623
	SRR8316894	Third green stage	2.519
	SRR8316900	Third green stage	0.577
	SRR8316901	Third green stage	1.604
	SRR8316898	Complete white stage	0.313
	SRR8316899	Complete white stage	10.581
	SRR8316903	Complete white stage	5.669
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.045
	SRR8316905	Silver flowering stage	0.027
	SRR8316906	Gold flowering stage	0.135
	SRR8316907	Gold flowering stage	0.834
	SRR8316908	Gold flowering stage	0.100
SRP132670	SRR6706286	Control	1.155
	SRR6706287	Light intensity 50%	2.210
	SRR6706288	Light intensity 20%	1.642
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.293
	CNS0095593	Slightly white alabastrum(diploid) 2	9.316
	CNS0095594	Slightly white alabastrum(diploid) 3	14.502
	CNS0095595	Whole white alabastrum(diploid) 2	10.854
	CNS0095596	Whole white alabastrum(diploid) 3	0.647
	CNS0095597	Whole white alabastrum(diploid) 4	13.880
	CNS0095598	Silvery flower (diploied) 1	44.978
	CNS0095599	Silvery flower (diploied) 2	46.786
	CNS0095600	Silvery flower (diploied) 3	7.733
	CNS0095601	Golden flower (diploid) 1	40.910
	CNS0095602	Golden flower (diploid) 2	19.905
	CNS0095603	Golden flower (diploid) 3	20.186
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.505
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.890
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.178
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.774
	CNS0095610	Silvery flower (tetraploid) 1	1.319
	CNS0095611	Silvery flower (tetraploid) 2	9.674
	CNS0095612	Silvery flower (tetraploid) 3	7.055
	CNS0095613	Golden flower (tetraploid) 1	0.404
	CNS0095614	Golden flower (tetraploid) 2	0.636
	CNS0095615	Golden flower (tetraploid) 3	0.193
CRA001975	CRR073297	Stem 1	46.857
	CRR073298	Stem 2	40.053
	CRR073299	Stem 3	72.077
	CRR073300	Leaf 1	1.673
	CRR073301	Leaf 2	2.538
	CRR073302	Leaf 3	3.667
	CRR073303	Juvenile bud 1	0.489
	CRR073304	Juvenile bud 2	0.363
	CRR073305	Juvenile bud 3	0.717
	CRR073306	Third green 1	0.839
	CRR073307	Third green 2	1.634
	CRR073308	Third green 3	1.801
	CRR073309	Second white 1	1.624
	CRR073310	Second white 2	0.242
	CRR073311	Second white 3	0.083
	CRR073312	Silver flowering 1	0.081
	CRR073313	Silver flowering 2	0.111
	CRR073314	Silver flowering 3	0.035
	CRR073315	Gold flowering 1	0.545
	CRR073316	Gold flowering 2	3.818
	CRR073317	Gold flowering 3	4.723
	CRR073318	Tawny withering 1	17.006
	CRR073319	Tawny withering 2	50.971
	CRR073320	Tawny withering 3	8.220