Gene detail

Detail information of GWHGAAZE024756

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091959.1	0	PREDICTED: phototropin-2 isoform X2 [Sesamum indicum]
COG	NP_419104.2	5E-31	sensory box histidine kinase
Swissprot	tr\|P93025\|PHOT2_ARATH	0	Phototropin-2
trEMBL	tr\|A0A059AQK2\|A0A059AQK2_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW55710.1}
TAIR10	AT5G58140.2	0	phototropin 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	48769626	48791664	+
GWHAAZE00000007	mRNA	48769626	48791664	+
GWHAAZE00000007	exon	48769626	48770092	+
GWHAAZE00000007	exon	48774266	48774448	+
GWHAAZE00000007	exon	48775028	48775110	+
GWHAAZE00000007	exon	48775206	48775482	+
GWHAAZE00000007	exon	48776312	48776531	+
GWHAAZE00000007	exon	48777091	48777161	+
GWHAAZE00000007	exon	48777710	48777816	+
GWHAAZE00000007	exon	48778265	48778335	+
GWHAAZE00000007	exon	48778684	48778743	+
GWHAAZE00000007	exon	48779048	48779137	+
GWHAAZE00000007	exon	48779999	48780075	+
GWHAAZE00000007	exon	48780290	48780374	+
GWHAAZE00000007	exon	48783682	48783785	+
GWHAAZE00000007	exon	48783993	48784042	+
GWHAAZE00000007	exon	48787954	48788060	+
GWHAAZE00000007	exon	48788664	48788780	+
GWHAAZE00000007	exon	48790061	48790112	+
GWHAAZE00000007	exon	48790432	48790544	+
GWHAAZE00000007	exon	48791319	48791459	+
GWHAAZE00000007	exon	48791554	48791664	+
GWHAAZE00000007	CDS	48769626	48770092	+
GWHAAZE00000007	CDS	48774266	48774448	+
GWHAAZE00000007	CDS	48775028	48775110	+
GWHAAZE00000007	CDS	48775206	48775482	+
GWHAAZE00000007	CDS	48776312	48776531	+
GWHAAZE00000007	CDS	48777091	48777161	+
GWHAAZE00000007	CDS	48777710	48777816	+
GWHAAZE00000007	CDS	48778265	48778335	+
GWHAAZE00000007	CDS	48778684	48778743	+
GWHAAZE00000007	CDS	48779048	48779137	+
GWHAAZE00000007	CDS	48779999	48780075	+
GWHAAZE00000007	CDS	48780290	48780374	+
GWHAAZE00000007	CDS	48783682	48783785	+
GWHAAZE00000007	CDS	48783993	48784042	+
GWHAAZE00000007	CDS	48787954	48788060	+
GWHAAZE00000007	CDS	48788664	48788780	+
GWHAAZE00000007	CDS	48790061	48790112	+
GWHAAZE00000007	CDS	48790432	48790544	+
GWHAAZE00000007	CDS	48791319	48791459	+
GWHAAZE00000007	CDS	48791554	48791664	+

Transcript Sequence
>GWHTAAZE024790 ATGGCGTTCTCAACAGGCGCATCATCATCTTCAACGTCGTCAAACAAATGGATGGCATTCGATTCAAACCAACACAAACCTGACCAATCCAACGTCATAGATTCACTCAAAAAGTCTGAAAAGTCAGTGCAAGAAAGGATAGCAGAGAGAACGGCAGAGTGGGGGCTGGGGGTACAATCCGGCAGCTTTAATGCGGTAGGGACGAGGGAGTCAACCGGGGAAGGTGAAGGAAAGAGTAGTAAGAAATCGTGGGAGTCAGAAAAGTCGGCCGGAAGGGAATCGGGGTCGTCGGAGTACGGGGGAATTCCGATGAGAGTGTCACAAGATTTGAGAGATGCATTGGCTAATCTGCAGCAGACTTTTGTTGTGTCTGATGCTACTAAGCCTGATTATCCTATCATGTATGCAAGTAGCGGCTTTTTTAGCATGACTGGTTACACTTCCAAGGAGGTTATTGGCAGGAATTGTCGATTTTTGCAGGGGGCAGAAACGGACCAGAACGAAGTGGAAAAGATAAGGAGTGCAGTAAGAACAGGAAAAAGTTACTGTGGGAGGCTCCTCAACTACAAGAAAGATGGAACTCCCTTTTGGAATCTCCTCACTGTCACCCCTATCAAAGATGACAATGGCAAGACCATCAAATTCATTGGAATGCAGGTTGAAGTCAGCAAATATACGGAAGGTGTCCTTGAGAAGGCAGTACGACCAAATGGATTGCCTCAGTCATTAATCCCTCGACAGAAGGAAGAAGCTTTAGGTTCCATGTCAGAGGTTGTACAAACTGTGAAACGTCCACGGCCTCAAATTCAGTCTAAGAATGACGTTACACATGAAAAGGAGGAGAAGTTAAACCTTGACTATATGCTACCCATATCTGCTGAAATTGAGAAAATGAGTACACCTGCCAGGCAAACCTCTCTATTGGATCCGAAAAGTGACGCATTTCGTCGAAGCTCTGTCCAGGAATCTAGCTATAAATCTCAAAAATCGGGACGAACTTCCTTCATGGGAAAAAAAGGAAAGTCTATGAGCAGTGTAGGGGTGAATGCATCTCAGCTGAACATTGAACCTCCTGAGATTTTGATGACTAAAGACATAGGACGCACTGACAGTTGGGACCAAGCTGAATCAGAAAGGCACATGCGCCAAGGAATTGACCTCGCTACCACATTGGAACGTATTGAGAAGAATTTTGTGATCACAGATCCTAGGCTTCCTGATAACCCAATTATATTTGCATCTGATAGTTTTCTTGAGTTAACGGAGTATACACGTGAAGAAATTTTAGGAAGAAACTGCCGATTTCTTCAAGGGCCTGAAACTGATCAAGGAACTGTCTCAAAGATAAGAGACGCTATCAGAGAACAAAGAGAGATTACTGTGCAGCTGATCAACTATACTAAGAGCGATGGGAGTGATCATGTGGAACCCTTAAGAAACCGCCTCTCAGAGGGAACAGAGCTAAAAAGTGCTAAGTTGGTCAAAGCTACTGCAGAAAATGTTAATGAAGCCGTTCGAGAACTTCCTGATGCCAACTCGAGACCAGAGGACTTGTGGGCTGTACACTCTCAACCTGTCTTCCCAAAGCCGCACAATAGGTATAGTTCTTGTTGGACAGCAATACAAAAGATCACTGCAGCTGGTGAGAGGATTGGACTAGATCATTTTAAGCCGATAAGACCTTTGGGATGTGGAGACACTGGCAGTGTTCATTTGGTGGAGCTGAAAGATTCTGGTGAACTGTATGCTATGAAGGCGATGGAGAAATCAGTAATGCTAAATCGTAATAAGACTCCAACACATGTTTGCTTGATAACTGACTTTTGTCCTGGTGGAGAATTATTTGCATTGCTTGACAAGCAGCCTTTGAAAATGTTCAAAGAGGATTCTGCAAGGTTCTATGCAGCTGAGGTCGTAATTGGCTTGGAATATCTTCACTGTTTAGGAATAATATACCGGGATCTGAAACCGGAAAATGTGCTACTTCAAAGGGATGGGCATGTTGTCTTAGCCGATTTTGATCTATCATTGAAGACATCCTGCAAACCCCAAATTATAAAGCAAGCTGCTCCTAAGAGAAGGTCTAGGAGTCAACCGCCACCAATATTTGTTGCAGAACCAGTAACCCAATCAAATTCCTTTGTTGGAACTGAGGAATACATTGCTCCCGAAATTATTAAAGGAGCAGGCCACAGTAGTGCTATTGATTGGTGGGCTCTTGGTATTTTACTTTATGAGATGCTTTATGGGCGTACGCCATTCAGGGGAAAGAATAGGCAGAAAACATTTGCCAACATCTTGTACAAAGACCTCACCTTTCCTAGTAGCATTCCGGTAAGCCTTGCAGCCAGACAGTTGATAAATGCGTTGTTAAACAGAGACCCCGCTAGCCGTTTAGGATCAAACAGCGGTGCCAGTGAAATCAAAGAACATCCCTTTTTCCGTGTGATAAATTGGCCTCTGATCCGCTGCATGAGCCCGCCACCATTAGATGCACCTCTTCAGTTAATTGGGAAAGAAGAGAATGCCAAAGATATACGGTGGGACGATGAAGGGGTGCTTGCTCATTCTATTGAGTTATTCTAG

Network for GWHGAAZE024756

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13426.8	PAS_9	127	223	9.90E-19
PF13426.8	PAS_9	406	471	4.70E-11
PF00069.26	Pkinase	597	814	1.50E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.363
	SRR3591706	second leaf	65.994
	SRR3591707	mature leaf	105.899
	SRR3591708	Shoot apex	20.306
	SRR3591709	Stem	5.761
	SRR3591710	White floral bud	21.163
	SRR3591711	White flower	11.203
	SRR3591712	Green floral bud	11.482
	SRR3591713	Yellow flower	2.166
SRP173429	SRR8316895	Juvenile bud stage	5.717
	SRR8316896	Juvenile bud stage	6.703
	SRR8316897	Juvenile bud stage	3.719
	SRR8316894	Third green stage	3.326
	SRR8316900	Third green stage	6.214
	SRR8316901	Third green stage	7.082
	SRR8316898	Complete white stage	1.613
	SRR8316899	Complete white stage	7.810
	SRR8316903	Complete white stage	5.446
	SRR8316902	Silver flowering stage	2.877
	SRR8316904	Silver flowering stage	3.949
	SRR8316905	Silver flowering stage	1.610
	SRR8316906	Gold flowering stage	3.889
	SRR8316907	Gold flowering stage	4.041
	SRR8316908	Gold flowering stage	4.834
SRP132670	SRR6706286	Control	8.693
	SRR6706287	Light intensity 50%	8.511
	SRR6706288	Light intensity 20%	8.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.739
	CNS0095593	Slightly white alabastrum(diploid) 2	3.238
	CNS0095594	Slightly white alabastrum(diploid) 3	3.732
	CNS0095595	Whole white alabastrum(diploid) 2	3.560
	CNS0095596	Whole white alabastrum(diploid) 3	3.147
	CNS0095597	Whole white alabastrum(diploid) 4	3.827
	CNS0095598	Silvery flower (diploied) 1	17.979
	CNS0095599	Silvery flower (diploied) 2	13.323
	CNS0095600	Silvery flower (diploied) 3	8.084
	CNS0095601	Golden flower (diploid) 1	11.261
	CNS0095602	Golden flower (diploid) 2	12.297
	CNS0095603	Golden flower (diploid) 3	10.940
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.911
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.017
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.558
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.657
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.239
	CNS0095610	Silvery flower (tetraploid) 1	5.308
	CNS0095611	Silvery flower (tetraploid) 2	8.435
	CNS0095612	Silvery flower (tetraploid) 3	3.197
	CNS0095613	Golden flower (tetraploid) 1	1.322
	CNS0095614	Golden flower (tetraploid) 2	4.502
	CNS0095615	Golden flower (tetraploid) 3	0.687
CRA001975	CRR073297	Stem 1	13.167
	CRR073298	Stem 2	12.348
	CRR073299	Stem 3	8.759
	CRR073300	Leaf 1	7.887
	CRR073301	Leaf 2	7.701
	CRR073302	Leaf 3	5.201
	CRR073303	Juvenile bud 1	2.792
	CRR073304	Juvenile bud 2	1.872
	CRR073305	Juvenile bud 3	6.055
	CRR073306	Third green 1	1.549
	CRR073307	Third green 2	1.485
	CRR073308	Third green 3	2.604
	CRR073309	Second white 1	1.215
	CRR073310	Second white 2	1.902
	CRR073311	Second white 3	1.950
	CRR073312	Silver flowering 1	0.751
	CRR073313	Silver flowering 2	0.900
	CRR073314	Silver flowering 3	0.715
	CRR073315	Gold flowering 1	41.415
	CRR073316	Gold flowering 2	87.556
	CRR073317	Gold flowering 3	41.320
	CRR073318	Tawny withering 1	9.148
	CRR073319	Tawny withering 2	9.273
	CRR073320	Tawny withering 3	5.335