Gene detail

Detail information of GWHGAAZE024752

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625180.1	0	PREDICTED: probable serine/threonine-protein kinase WNK9 isoform X1 [Nicotiana tomentosiformis]
COG	YP_004284573.1	5E-20	putative serine/threonine protein kinase
Swissprot	tr\|Q9CAV6\|WNK1_ARATH	0	Serine/threonine-protein kinase WNK1
trEMBL	tr\|K4B0H1\|K4B0H1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g097840.2.1}
TAIR10	AT3G04910.1	0	with no lysine (K) kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	48690185	48694647	-
GWHAAZE00000007	mRNA	48690185	48694647	-
GWHAAZE00000007	exon	48694573	48694647	-
GWHAAZE00000007	exon	48694426	48694463	-
GWHAAZE00000007	exon	48693696	48693923	-
GWHAAZE00000007	exon	48692747	48692967	-
GWHAAZE00000007	exon	48692104	48692261	-
GWHAAZE00000007	exon	48691702	48692013	-
GWHAAZE00000007	exon	48690185	48691039	-
GWHAAZE00000007	CDS	48694573	48694647	-
GWHAAZE00000007	CDS	48694426	48694463	-
GWHAAZE00000007	CDS	48693696	48693923	-
GWHAAZE00000007	CDS	48692747	48692967	-
GWHAAZE00000007	CDS	48692104	48692261	-
GWHAAZE00000007	CDS	48691702	48692013	-
GWHAAZE00000007	CDS	48690185	48691039	-

Transcript Sequence
>GWHTAAZE024786 ATGAATGGTCTTAACCATCTTGAACCAGATTACTCTGAGTTTATTGAAGTTGATCCCACTGGAAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACTGTCTATAGAGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGCTTTATGATTTCTTACAAAGCCCCGAAGATCTTGAGAGGCTCTATTGTGAAATTCATTTGCTCAAAACACTCAACCACCAAAACATTATGAAGTTCTACACTTCTTGGGTTGATACTGCAAACAGAAACATCAATTTTGTAACTGAGATGTTCACTTCTGGTACTCTTAAGCAGTACAGGGAAAAGCACAAGAGAGTAAACATTAGAGTAGTGAAGCATTGGTGTAGGCAGATATTGAAAGGGCTTCTCTATCTTCATAGCCATGACCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAACATCTTTGTTAATGGCAACCATGGTGAAGTTAAAATTGGGGATCTGGGCCTTGCAGCTATTCTTCAAAAATCACATGCTGCTCACTGTGTTGGGACACCAGAATTCATGGCTCCAGAAGTGTACAAAGAGGAATACAATGAACTAGTTGATGTTTATTCTTTTGGAATGTGCATCTTGGAAATGGTCACCTTTGAATATCCATATAGTGAATGCACTCATCCTGCTCAAATCTACAAGAAAGTTACCTCTGGGAAAAAACCCGATGCTTTATACAAAGTGAAAGATCCAGAGGTACGTCAGTTTGTTGATAAATGCTTGGCCGCTGTCACTCTAAGGCTCTCGAGGGAGCTTCTAAATGACCCTTTTCTTCAACTTGATGATTGCAAGCCGAATGTAAGGTCAATAGAGTGCCAGAGAGAACAAGATCACATAGATCCTCTTCTAAGGCAGCCCTTTTTCGAACTAGATTATGAAGGAAACTTGTTTAGTAACAATTCGTTCGATAGGTACTCCAGTGGTGTTTGTTTTGAGCAAAGTGGAATTGAACTTTTGAGTACAATGTTCAAATTTGAAATTGAGATTCCATATCATTTTGCAGGCCGCATTAGGAACATCTATTTCCCGTTTGACATCGAAATGGATACAGCACTATGTGTCTCAACCGAAATGGTTGGAGAGCTCGACATAACCGACCAAGATGTGACAAAAATAGCAGATATGATTGACGGTGAGATTATTAAGTTGGTGCCCGAATGGAAGGTGGGACTCAAAATCGAAGAATCACCCCGGTTTGCAAATTCAAGCTATTGTCACAATTGTGTCTCTAACCATACATCTAATGGCTCCTTCACGAACTTTTTATCCAAAAACCCCAATCTCAATGGTATGCAAATTTCGCAATGTTGTGGGCATGGCCGGTTCGAAGAGATAACATATAGTACTAGTCCACAGAAATACGGTTTTGATGGAGCAAATAATCCAGTTCATTCAAGCCGATCCAACGGTTTAAATTGTAGAGATGATATATGGGATCAGCATGAAAGCCTCGAATGTAGCTCAGCAGACTCGGGAGAGAGCCATTCTGCAGAGGACAATGAGACGGAAAAGGAAAACAAAGTTCTTTCCACTTTGAGAGATTTCGTAAAATCTTTATCAGGTCCCCATCATGAGCACCAACACGATTATGAGGAGGAAATTCAGCAGGAATTGAGGTGGCTTAAAGCAAAGTACCAAATGGAATTGAGTGATCTTAGAGATCGACAGTTTGGTGGTAGAAATGGCAAACAGAAAAGCAAAAATGAGATTTCATCTAAGGCAGGGGAAATGGTTTCTCCACAGAGTTCGTGCACTAAGGGATTGCTTCCAGGCACTCCTCAAAGAACAAAGTCACTACCCGTTGATGCTGTTGATATATAA

Network for GWHGAAZE024752

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	27	265	4.40E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	101.230
	SRR3591706	second leaf	38.664
	SRR3591707	mature leaf	17.348
	SRR3591708	Shoot apex	71.247
	SRR3591709	Stem	68.693
	SRR3591710	White floral bud	33.221
	SRR3591711	White flower	37.523
	SRR3591712	Green floral bud	25.350
	SRR3591713	Yellow flower	24.306
SRP173429	SRR8316895	Juvenile bud stage	25.239
	SRR8316896	Juvenile bud stage	37.189
	SRR8316897	Juvenile bud stage	19.627
	SRR8316894	Third green stage	22.766
	SRR8316900	Third green stage	47.397
	SRR8316901	Third green stage	38.348
	SRR8316898	Complete white stage	14.580
	SRR8316899	Complete white stage	81.597
	SRR8316903	Complete white stage	20.496
	SRR8316902	Silver flowering stage	16.372
	SRR8316904	Silver flowering stage	23.361
	SRR8316905	Silver flowering stage	10.595
	SRR8316906	Gold flowering stage	21.903
	SRR8316907	Gold flowering stage	35.100
	SRR8316908	Gold flowering stage	32.940
SRP132670	SRR6706286	Control	10.736
	SRR6706287	Light intensity 50%	15.644
	SRR6706288	Light intensity 20%	15.598
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.138
	CNS0095593	Slightly white alabastrum(diploid) 2	25.379
	CNS0095594	Slightly white alabastrum(diploid) 3	13.550
	CNS0095595	Whole white alabastrum(diploid) 2	23.341
	CNS0095596	Whole white alabastrum(diploid) 3	13.425
	CNS0095597	Whole white alabastrum(diploid) 4	14.470
	CNS0095598	Silvery flower (diploied) 1	20.801
	CNS0095599	Silvery flower (diploied) 2	21.718
	CNS0095600	Silvery flower (diploied) 3	25.108
	CNS0095601	Golden flower (diploid) 1	15.032
	CNS0095602	Golden flower (diploid) 2	23.811
	CNS0095603	Golden flower (diploid) 3	21.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.298
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.122
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.403
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.591
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.763
	CNS0095610	Silvery flower (tetraploid) 1	6.198
	CNS0095611	Silvery flower (tetraploid) 2	3.720
	CNS0095612	Silvery flower (tetraploid) 3	2.271
	CNS0095613	Golden flower (tetraploid) 1	1.428
	CNS0095614	Golden flower (tetraploid) 2	3.874
	CNS0095615	Golden flower (tetraploid) 3	4.118
CRA001975	CRR073297	Stem 1	17.848
	CRR073298	Stem 2	15.910
	CRR073299	Stem 3	7.020
	CRR073300	Leaf 1	16.600
	CRR073301	Leaf 2	14.760
	CRR073302	Leaf 3	7.119
	CRR073303	Juvenile bud 1	9.899
	CRR073304	Juvenile bud 2	1.928
	CRR073305	Juvenile bud 3	8.168
	CRR073306	Third green 1	0.281
	CRR073307	Third green 2	0.425
	CRR073308	Third green 3	0.372
	CRR073309	Second white 1	0.864
	CRR073310	Second white 2	0.314
	CRR073311	Second white 3	0.547
	CRR073312	Silver flowering 1	1.201
	CRR073313	Silver flowering 2	1.716
	CRR073314	Silver flowering 3	2.567
	CRR073315	Gold flowering 1	2.806
	CRR073316	Gold flowering 2	6.547
	CRR073317	Gold flowering 3	1.985
	CRR073318	Tawny withering 1	15.572
	CRR073319	Tawny withering 2	14.698
	CRR073320	Tawny withering 3	21.681