Gene detail

Detail information of GWHGAAZE024741

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760126.1	0	PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Nicotiana sylvestris]
COG	YP_001958461.1	6E-18	hypothetical protein Aasi_1443
Swissprot	tr\|Q8RXC8\|RBK2_ARATH	8E-167	Receptor-like cytosolic serine/threonine-protein kinase RBK2
trEMBL	tr\|A0A059B6Q7\|A0A059B6Q7_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW61724.1}
TAIR10	AT3G05140.1	3E-122	ROP binding protein kinases 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	48533039	48538006	-
GWHAAZE00000007	mRNA	48533039	48538006	-
GWHAAZE00000007	exon	48537607	48538006	-
GWHAAZE00000007	exon	48536360	48536611	-
GWHAAZE00000007	exon	48535808	48535962	-
GWHAAZE00000007	exon	48535099	48535178	-
GWHAAZE00000007	exon	48534553	48534604	-
GWHAAZE00000007	exon	48534246	48534395	-
GWHAAZE00000007	exon	48533039	48533209	-
GWHAAZE00000007	CDS	48537607	48538006	-
GWHAAZE00000007	CDS	48536360	48536611	-
GWHAAZE00000007	CDS	48535808	48535962	-
GWHAAZE00000007	CDS	48535099	48535178	-
GWHAAZE00000007	CDS	48534553	48534604	-
GWHAAZE00000007	CDS	48534246	48534395	-
GWHAAZE00000007	CDS	48533039	48533209	-

Transcript Sequence
>GWHTAAZE024775 ATGTTTTACATCATTATATTGGTTTCAATTGTAGACTTGAGGTGTTTTGAGATGGAGAAGGAAAAGGAAAACGCTTCCTCTCCTCGTGGGGTTATAGAAGCATGCATTAGAGGGTCGGAAAATGAGCCAAGCTCTCCTGAAAGTAACACTTCAGAGGCTGCAGAATCATGTTCTTCAAAATCATGGGGTTTATCTCGTTGGCACAACTTCTTCAAACTGTGGAAAAGAAAATCGATTAAGAGGCTCCCTTCTTTCCCTCCTCTTGCTGTACCGAAGATATCAAGAAGAAAGAGCAGAAGTGTTAGAGAAAATACGGATATTGACTTAAGCCATTTCAAGTCATCATGGAAAAACTTCACTCTCTCTGACCTCAGCACTGCAACTAACAACTTCAGTCGTGAAAATTTGATCGGAAGGGGTGGATTTGCTGAAGTTTACAAGGGCCGTTTGCCAGATGGGCAGCTTGTGGCAGTTAAACGACTCAATAAGGGGACAGACGAAGACCGAATAATAGGCTTTTTATCCGAAATCGGCACTATAGCACATGTAGATCATCCTAATACTGCTAAATTGGTTGGCTATGGAGTTGAAGGGGGAACGTATCTTGTTCTTCAGCTATCTCCACTTGGGAGTTTAGGTTCACTTCTACACGGTTCAAATGAAAAACTAGATTGGGGTGCTAGGTATAAAATCATTTTAGGGACAGCTGATGGGATACTCTATCTTCATGAGAATTGCCAAAGGCGGATTATTCACAGGGATATTAAGGCCGATAATATTCTACTCACGGAGAATTTTGAGCCTCAGATTTGTGATTTCGGGCTTGCTAAATGGCTGCCGAAACAGTGGACTCACCACAATGTCTCGAAGTTTGAAGGCACCTTCGGGTACTTTGCACCAGAGTACTTCATGCATGGTATAGTAGACGAGAAGACTGATGCAAAACATTTGCTTGAGAACAATGAAGCTAAAGAAATTGTTGACCGTTCTCTCGGTGATGATTACAATCGAGCAGAGATGGACCGTGTGCTGTTGACGGCCTCTTTGTGCGTAGAACCCACTCCTGTCTTACGGCCTCGAATGAGTCAAGTGACAGTGCTTCTAAGAGGGGAAGACTACAACCCTGTAGGTTCGTATGAACACCAAAAGCGGTTAATTCAAAGAACATACTCCGAGGAGCTCATGGATGCCGAAGAATACAACTCAACGAAGTATTTGAGCGATCTCAATCGTCATAAACAGCTTGTTTTGGGTGCTTGA

Network for GWHGAAZE024741

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	132	312	6.80E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.042
	SRR3591706	second leaf	13.483
	SRR3591707	mature leaf	0.435
	SRR3591708	Shoot apex	10.401
	SRR3591709	Stem	10.563
	SRR3591710	White floral bud	27.014
	SRR3591711	White flower	3.058
	SRR3591712	Green floral bud	21.543
	SRR3591713	Yellow flower	0.273
SRP173429	SRR8316895	Juvenile bud stage	6.037
	SRR8316896	Juvenile bud stage	9.104
	SRR8316897	Juvenile bud stage	4.712
	SRR8316894	Third green stage	3.427
	SRR8316900	Third green stage	15.905
	SRR8316901	Third green stage	13.930
	SRR8316898	Complete white stage	2.442
	SRR8316899	Complete white stage	4.672
	SRR8316903	Complete white stage	4.040
	SRR8316902	Silver flowering stage	0.996
	SRR8316904	Silver flowering stage	1.643
	SRR8316905	Silver flowering stage	0.591
	SRR8316906	Gold flowering stage	1.086
	SRR8316907	Gold flowering stage	0.455
	SRR8316908	Gold flowering stage	1.202
SRP132670	SRR6706286	Control	14.451
	SRR6706287	Light intensity 50%	15.356
	SRR6706288	Light intensity 20%	11.510
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.553
	CNS0095593	Slightly white alabastrum(diploid) 2	11.939
	CNS0095594	Slightly white alabastrum(diploid) 3	13.017
	CNS0095595	Whole white alabastrum(diploid) 2	34.264
	CNS0095596	Whole white alabastrum(diploid) 3	40.300
	CNS0095597	Whole white alabastrum(diploid) 4	67.080
	CNS0095598	Silvery flower (diploied) 1	8.874
	CNS0095599	Silvery flower (diploied) 2	12.882
	CNS0095600	Silvery flower (diploied) 3	2.872
	CNS0095601	Golden flower (diploid) 1	8.163
	CNS0095602	Golden flower (diploid) 2	5.594
	CNS0095603	Golden flower (diploid) 3	4.788
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.731
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.137
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.059
	CNS0095607	Whole white alabastrum(tetraploid) 1	78.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	99.041
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.266
	CNS0095610	Silvery flower (tetraploid) 1	2.146
	CNS0095611	Silvery flower (tetraploid) 2	8.242
	CNS0095612	Silvery flower (tetraploid) 3	11.046
	CNS0095613	Golden flower (tetraploid) 1	1.440
	CNS0095614	Golden flower (tetraploid) 2	1.448
	CNS0095615	Golden flower (tetraploid) 3	6.477
CRA001975	CRR073297	Stem 1	16.566
	CRR073298	Stem 2	18.408
	CRR073299	Stem 3	12.218
	CRR073300	Leaf 1	31.879
	CRR073301	Leaf 2	21.159
	CRR073302	Leaf 3	14.929
	CRR073303	Juvenile bud 1	35.910
	CRR073304	Juvenile bud 2	21.295
	CRR073305	Juvenile bud 3	17.456
	CRR073306	Third green 1	11.753
	CRR073307	Third green 2	18.925
	CRR073308	Third green 3	13.793
	CRR073309	Second white 1	1.439
	CRR073310	Second white 2	2.436
	CRR073311	Second white 3	3.376
	CRR073312	Silver flowering 1	12.420
	CRR073313	Silver flowering 2	16.075
	CRR073314	Silver flowering 3	6.547
	CRR073315	Gold flowering 1	17.779
	CRR073316	Gold flowering 2	11.340
	CRR073317	Gold flowering 3	11.659
	CRR073318	Tawny withering 1	15.994
	CRR073319	Tawny withering 2	15.360
	CRR073320	Tawny withering 3	11.435