Gene detail

Detail information of GWHGAAZE024730

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AIZ93902.1	0	3-dehydroquinate dehydratase/shikimate dehydrogenase 1 [Camellia sinensis]
COG	NP_867287.1	1E-87	3-dehydroquinate dehydratase / shikimate 5-dehydrogenase precursor
Swissprot	tr\|Q9SQT8\|DHQSD_ARATH	2E-166	Shikimate dehydrogenase (Precursor)
trEMBL	tr\|A0A067DTM3\|A0A067DTM3_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO46344.1}
TAIR10	AT3G06350.1	8E-136	dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	48307283	48318070	+
GWHAAZE00000007	mRNA	48307283	48318070	+
GWHAAZE00000007	exon	48307283	48307497	+
GWHAAZE00000007	exon	48311407	48311512	+
GWHAAZE00000007	exon	48312074	48312292	+
GWHAAZE00000007	exon	48313320	48313660	+
GWHAAZE00000007	exon	48313914	48313977	+
GWHAAZE00000007	exon	48314161	48314269	+
GWHAAZE00000007	exon	48315077	48315226	+
GWHAAZE00000007	exon	48316086	48316237	+
GWHAAZE00000007	exon	48316318	48316480	+
GWHAAZE00000007	exon	48318027	48318070	+
GWHAAZE00000007	CDS	48307283	48307497	+
GWHAAZE00000007	CDS	48311407	48311512	+
GWHAAZE00000007	CDS	48312074	48312292	+
GWHAAZE00000007	CDS	48313320	48313660	+
GWHAAZE00000007	CDS	48313914	48313977	+
GWHAAZE00000007	CDS	48314161	48314269	+
GWHAAZE00000007	CDS	48315077	48315226	+
GWHAAZE00000007	CDS	48316086	48316237	+
GWHAAZE00000007	CDS	48316318	48316480	+
GWHAAZE00000007	CDS	48318027	48318070	+

Transcript Sequence
>GWHTAAZE024764 ATGGGTAGCTTGGGTTTGTTGAAGAGCACGACAATGATTTGTGCTCCATTAATGGGGCATTCTGTCGAACAGATGGTCGGCGATATGTACAAGGCAAAAGCTCAGGGTGCTGATGTAGTTGAGCTCAGGCTTGACTGCATAAAGAACTTTAAGCCTCAGCAAGACCTAAAGTTTCTTCTTAATAACAAGCCACTGCCAGTTGTCATTGTTTGTAGGCCAAAATGGGAAGGCGGTCATTATGAAGGTGATGAATGCACGCGGATAGAAGCACTTCGTTTAGCTAAAGAATTGGGAGCAGATTATATTGATCTGGAGCTCAAGGTAGCTTCTGATCTCATGGAAGAACTCAAACCGAGTCGGCGCAGCAGTAGCAAAATAATAGTATCTTGTTTTCTAGATACAATGATCTCTGCAAAAGAAGATCTCAGCCATCTTATTGTACGCATGCAATCTACCGGAGCAGATATCATCAAACTTGTTGCGAATGCCACAAATATCACAGAGCTTTCAAGAATTTTTCATTTGGTTCCACATTGCCAGGTACCATTAATCGCATACTCTGTGGGGGAGCGAGGCCTTATAAGTCAGTTATTGGGCCCAAAATTTGGTGGTGTCTTAGTCTATGGATCTATTGAAGGAAACTCGGTGCCTGGTGTGCCTGCTCTAGACCACCTTAAACAGGCTTATAAAATTGAGTATATGGATGCTGAAACTAAAGTTTTTGGGCTCATTTCGAAACCAGTAGGCCATAGCAAAGGCCCGCTTTTGCATAATCCTACCTTCAGACACATGGGATTCAATGGGATTTATGTGCCAATGCTTGTGGATGATCTCAAGGAGTTCTTTAGCGTCTATTCAAGTCCCGATTTTGCTGGTTACAGTGTCGGAATTCCATACAAGGAAGCAGTAATGGAATTTTGTGATGAAATCCATCCGCTTGCTCAGTCTATAGGTGCTGTTAATACTATTGTGAAGAGGTCTAGTGATGGGAAGCTGGTCGGTTATAATACGGATTGTGAGGCTTCTATAACTGCAATTGAGGATGCTCTCAAAGTTTATGGTTGCACTAACGGACAAGCATTACTCCGTTCACCGCTCACTGGGAAATTATTTGTGCTAGTTGGTGCTGGTGGTGCCGGAAGAGCACTGGCATTTGGTGCTAAGAGCAGGGGAGCTCGGGTTCTCATTTTCGATATTGATTTTGGTAGAGCAAAGTCTCTTGCGCAAGCCGTTTCTGGTGAAGCTCGGCCTTTTGAAGATTTACTTCACTTCCAACCCGAGAAAGGGTCAATCCTTGCAAATGCAACACCTATAGGAATGCATCCAAATACAGATACTCGAATCCCAGTGGCCGAGGAAACGTTGCGGGATTACAGGCTTGTCTTTGATGCCGTTTATACACCTAGAAAAACAAAGCTATTGAAAGATGCCGATGATGCTGGAGCCATCATAGTAAGTGGAGTTGAAATGTTCCTTCGGCAGGCCATGGGCCAGTTCAATCTTTTCACAGGTGGCCAAGCACCAGTAGAGTTCATGCGAAAGATCGTCTTGGAGAAATTCTGA

Network for GWHGAAZE024730

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01487.16	DHquinase_I	14	229	6.90E-48
PF08501.12	Shikimate_dh_N	243	323	2.00E-23
PF18317.2	SDH_C	487	517	1.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13832	aroDE, DHQ-SDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003855	molecular_function	3-dehydroquinate dehydratase activity
GO:0003824	molecular_function	catalytic activity
GO:0004764	molecular_function	shikimate 3-dehydrogenase (NADP+) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.066
	SRR3591706	second leaf	18.607
	SRR3591707	mature leaf	6.209
	SRR3591708	Shoot apex	15.209
	SRR3591709	Stem	143.430
	SRR3591710	White floral bud	5.272
	SRR3591711	White flower	41.648
	SRR3591712	Green floral bud	3.922
	SRR3591713	Yellow flower	263.426
SRP173429	SRR8316895	Juvenile bud stage	14.598
	SRR8316896	Juvenile bud stage	14.370
	SRR8316897	Juvenile bud stage	7.632
	SRR8316894	Third green stage	2.991
	SRR8316900	Third green stage	8.678
	SRR8316901	Third green stage	9.547
	SRR8316898	Complete white stage	3.148
	SRR8316899	Complete white stage	5.262
	SRR8316903	Complete white stage	6.081
	SRR8316902	Silver flowering stage	72.801
	SRR8316904	Silver flowering stage	86.645
	SRR8316905	Silver flowering stage	47.574
	SRR8316906	Gold flowering stage	308.649
	SRR8316907	Gold flowering stage	308.631
	SRR8316908	Gold flowering stage	284.597
SRP132670	SRR6706286	Control	10.833
	SRR6706287	Light intensity 50%	9.194
	SRR6706288	Light intensity 20%	9.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.485
	CNS0095593	Slightly white alabastrum(diploid) 2	10.493
	CNS0095594	Slightly white alabastrum(diploid) 3	13.648
	CNS0095595	Whole white alabastrum(diploid) 2	5.156
	CNS0095596	Whole white alabastrum(diploid) 3	3.567
	CNS0095597	Whole white alabastrum(diploid) 4	3.849
	CNS0095598	Silvery flower (diploied) 1	9.751
	CNS0095599	Silvery flower (diploied) 2	9.929
	CNS0095600	Silvery flower (diploied) 3	19.624
	CNS0095601	Golden flower (diploid) 1	31.180
	CNS0095602	Golden flower (diploid) 2	98.705
	CNS0095603	Golden flower (diploid) 3	92.096
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.879
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.991
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.034
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.885
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.281
	CNS0095610	Silvery flower (tetraploid) 1	45.797
	CNS0095611	Silvery flower (tetraploid) 2	22.726
	CNS0095612	Silvery flower (tetraploid) 3	27.333
	CNS0095613	Golden flower (tetraploid) 1	169.421
	CNS0095614	Golden flower (tetraploid) 2	116.148
	CNS0095615	Golden flower (tetraploid) 3	434.150
CRA001975	CRR073297	Stem 1	9.778
	CRR073298	Stem 2	6.798
	CRR073299	Stem 3	6.106
	CRR073300	Leaf 1	5.880
	CRR073301	Leaf 2	7.042
	CRR073302	Leaf 3	7.863
	CRR073303	Juvenile bud 1	5.085
	CRR073304	Juvenile bud 2	2.193
	CRR073305	Juvenile bud 3	5.100
	CRR073306	Third green 1	200.765
	CRR073307	Third green 2	83.165
	CRR073308	Third green 3	123.219
	CRR073309	Second white 1	104.355
	CRR073310	Second white 2	137.054
	CRR073311	Second white 3	183.764
	CRR073312	Silver flowering 1	349.058
	CRR073313	Silver flowering 2	298.920
	CRR073314	Silver flowering 3	277.011
	CRR073315	Gold flowering 1	12.769
	CRR073316	Gold flowering 2	14.355
	CRR073317	Gold flowering 3	6.572
	CRR073318	Tawny withering 1	22.069
	CRR073319	Tawny withering 2	25.376
	CRR073320	Tawny withering 3	26.081