Gene detail

Detail information of GWHGAAZE024670

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15544.1	8.5883E-152	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	1E-30	hypothetical protein Aasi_1443
Swissprot	tr\|Q0WRY5\|CDL1_ARATH	4E-63	Serine/threonine-protein kinase CDL1 {ECO:0000305}
trEMBL	tr\|A0A068V4U5\|A0A068V4U5_COFCA	3E-152	Coffea canephora DH200=94 genomic scaffold, scaffold_100 {ECO:0000313\|EMBL:CDP15544.1}
TAIR10	AT1G54820.1	9E-81	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47346803	47349422	+
GWHAAZE00000007	mRNA	47346803	47349422	+
GWHAAZE00000007	exon	47346803	47347162	+
GWHAAZE00000007	exon	47348071	47348321	+
GWHAAZE00000007	exon	47349033	47349422	+
GWHAAZE00000007	five_prime_UTR	47346803	47346855	+
GWHAAZE00000007	CDS	47346856	47347162	+
GWHAAZE00000007	CDS	47348071	47348321	+
GWHAAZE00000007	CDS	47349033	47349422	+

Transcript Sequence
>GWHTAAZE024704 TGTCTCTCGGGCTCGCAAAAACACACGCACAGAGTTCATTGCCCTTTGTGCCCATGGAAACCAATGCCACTGTCGCGCCTGCAAGCCCACCTGACCTAGCAGCAGCAAGAAACCGCACCCATAACCATCGCCATTCGCAGCTTCACTCACACCACCACCGCGATTTTCTCCCCTCCACCTCCATTCTCTTAATTGTCATACCCATCATCATAACCATCTTACTACTCTCTATTCTTTTAATCGTAATAATGCTCCGACGCCTCAAACCTGCCAAAAACAATGCCAATATCAGTGGCGGCATCACCGACAAAAATTGCTTGTTCATTGCCCATAGCACCATTAATTTCAATTCAAGTCCAGATGTGAAGGGCGGATGTTTATACGGAGGAAGTGCAAGTTCAGGGCGGTTACCAGCGGTTAAATTTAGAGGAGTGCAAGTATTCACATACAAGGAGCTTGAAGCGGCGACTGATAAATTTAGTGAGACAAATGTGATTGGGAATGGAGGATTTGGGGTGGTTTATAAAGGAATATTGAGTGATGGAACAGTGGCAGCCATCAAGGTTCTCCACAGAGAAGGAAAGCAAGGCGAGCGTGCTTTTCGGTTAGAGGTGGATTTACTAAGCCGCCTCCACTCTCCATACTTAGTGGAGCTCCTCGGTTACTGTGCAGATCAACACCACCGCCTCCTAATTTTCGAGTACATGCCCAACGGTACTCTCCAACACCACCTCCACCCACCCCGTAATCAATCTCAACCGTTGAATTGGGGTACCCGATTGAGAATAGCCTTCAATTGCGCAAGGGCCCTCGAGTTCCTTCACGAGCACACGGTCCCGTCAGTAATTCACCGTGATTTCAAATGCAGTAACATTTTGTTAGATCAGAATTTTAAAGCCAAGGTGTCAGATTTTGGATTGGCCAAGATTGGCTCGGACAAGATCAACGGTCTGATTTCTACCCGAGTGTTGGGGACCACTGGGTATCTAGCACCAGAGTGA

Network for GWHGAAZE024670

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	143	315	9.20E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Extensin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.962
	SRR3591706	second leaf	11.464
	SRR3591707	mature leaf	2.635
	SRR3591708	Shoot apex	9.465
	SRR3591709	Stem	5.966
	SRR3591710	White floral bud	0.693
	SRR3591711	White flower	1.331
	SRR3591712	Green floral bud	5.017
	SRR3591713	Yellow flower	0.552
SRP173429	SRR8316895	Juvenile bud stage	10.274
	SRR8316896	Juvenile bud stage	8.404
	SRR8316897	Juvenile bud stage	4.939
	SRR8316894	Third green stage	3.716
	SRR8316900	Third green stage	9.354
	SRR8316901	Third green stage	6.499
	SRR8316898	Complete white stage	0.485
	SRR8316899	Complete white stage	4.670
	SRR8316903	Complete white stage	1.335
	SRR8316902	Silver flowering stage	0.099
	SRR8316904	Silver flowering stage	0.889
	SRR8316905	Silver flowering stage	0.357
	SRR8316906	Gold flowering stage	0.443
	SRR8316907	Gold flowering stage	0.313
	SRR8316908	Gold flowering stage	0.487
SRP132670	SRR6706286	Control	14.009
	SRR6706287	Light intensity 50%	13.493
	SRR6706288	Light intensity 20%	14.622
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.800
	CNS0095593	Slightly white alabastrum(diploid) 2	5.618
	CNS0095594	Slightly white alabastrum(diploid) 3	4.890
	CNS0095595	Whole white alabastrum(diploid) 2	4.153
	CNS0095596	Whole white alabastrum(diploid) 3	2.549
	CNS0095597	Whole white alabastrum(diploid) 4	3.459
	CNS0095598	Silvery flower (diploied) 1	4.371
	CNS0095599	Silvery flower (diploied) 2	5.957
	CNS0095600	Silvery flower (diploied) 3	1.953
	CNS0095601	Golden flower (diploid) 1	4.976
	CNS0095602	Golden flower (diploid) 2	2.054
	CNS0095603	Golden flower (diploid) 3	3.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.291
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.575
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.241
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.906
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.123
	CNS0095610	Silvery flower (tetraploid) 1	1.617
	CNS0095611	Silvery flower (tetraploid) 2	1.093
	CNS0095612	Silvery flower (tetraploid) 3	0.898
	CNS0095613	Golden flower (tetraploid) 1	0.710
	CNS0095614	Golden flower (tetraploid) 2	0.492
	CNS0095615	Golden flower (tetraploid) 3	0.035
CRA001975	CRR073297	Stem 1	20.409
	CRR073298	Stem 2	16.422
	CRR073299	Stem 3	22.172
	CRR073300	Leaf 1	13.404
	CRR073301	Leaf 2	13.535
	CRR073302	Leaf 3	10.343
	CRR073303	Juvenile bud 1	7.606
	CRR073304	Juvenile bud 2	7.155
	CRR073305	Juvenile bud 3	5.345
	CRR073306	Third green 1	0.256
	CRR073307	Third green 2	0.224
	CRR073308	Third green 3	0.137
	CRR073309	Second white 1	0.124
	CRR073310	Second white 2	0.065
	CRR073311	Second white 3	0.053
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.985
	CRR073316	Gold flowering 2	1.706
	CRR073317	Gold flowering 3	1.576
	CRR073318	Tawny withering 1	0.085
	CRR073319	Tawny withering 2	0.271
	CRR073320	Tawny withering 3	0.729