Gene detail

Detail information of GWHGAAZE024659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGI42451.1	1.8706E-150	xyloglucan endotransglycosylase/hydrolase [Neolamarckia cadamba]
COG	YP_004642276.1	4E-14	protein GluB
Swissprot	tr\|Q38857\|XTH22_ARATH	3E-136	Xyloglucan endotransglucosylase/hydrolase protein 22 (Precursor)
trEMBL	tr\|M4YSC6\|M4YSC6_9GENT	7E-151	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT4G25810.1	8E-92	xyloglucan endotransglycosylase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47192648	47194467	-
GWHAAZE00000007	mRNA	47192648	47194467	-
GWHAAZE00000007	exon	47194189	47194467	-
GWHAAZE00000007	exon	47193308	47193501	-
GWHAAZE00000007	exon	47192648	47193047	-
GWHAAZE00000007	CDS	47194189	47194467	-
GWHAAZE00000007	CDS	47193308	47193501	-
GWHAAZE00000007	CDS	47192648	47193047	-

Transcript Sequence
>GWHTAAZE024693 ATGGCTTCTTTTTCTTCAATTTCATTAATGGGGTTTATGCTATCTCTTATGCTTAGCTCTCTACTTGTACCCTCAAGAGCTAACTTCTACCAAGACTTTGATATTACGTGGGGTGATGGTCGTGGTAAGATACTCAACAATGGTGATCTCCTCAGTCTCTCTCTTGACAAAGCCTCGGGCTCAGGCGTCCAGTCCAAGAATGAATATTTGTTCGCAAAAATTGATATGCAAATCAAGCTTATACCTGGAAACTCTGCTGGCACTGTCACTACATTTTATCTTTCGTCACAAGGAACAACTCATGACGAATTAGACTTCGAATTTTTGGGAAACTTGAGTGGCGATCCTTATATTCTTCAGACCAATGTCTACACTCAAGGCAAAGGTGACAAAGAACAACAATTTTATCCTTGGTTTGATCCAACTGTTGCTTTCCATACCTATTCCATCCATTGGAATCCTCAACGCATTATCTTCTTTGTCGATGGTATACCCATTAGAGAGTTCAAGAACGCTGAGTCAATGGGCATTCCATATCTGAACCACCAGGCAATGAGGATATATGCTACCCTCTGGGACGGAGATAACTGGGCAACAAGAGGTGGGCGTGTTAAGACTGACTGGACTCAAGCTCCTTTCACTGCGTCTTACGCAAATTTTAGAGCAAATGCTTGTATTTGGTCTTCAGGAATTTCATCGTGTGGTTCTGTATCTTCGCGTTCGGGCAATAATTCATGGCTAAATGAGGATCTAGATGCCACAGGTCGAGGAAGGCTACAACGGGTGCAAAAGTATTATATGATATACAATTACTGTACGGACGCTAAGCGCTTTCCGCAAGGCTTCCCTCCTGAGTGTGCTATTAATCCTTAG

Network for GWHGAAZE024659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	30	209	8.70E-57
PF06955.13	XET_C	242	286	1.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14504	TCH4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0006073	biological_process	cellular glucan metabolic process
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.013
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.009
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.006
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.013
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.043
	CNS0095599	Silvery flower (diploied) 2	0.023
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.012
	CNS0095603	Golden flower (diploid) 3	0.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.008
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.021
	CRR073301	Leaf 2	0.051
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.013
	CRR073304	Juvenile bud 2	0.011
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.009
	CRR073308	Third green 3	0.004
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.007
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.009
	CRR073316	Gold flowering 2	0.036
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.007
	CRR073319	Tawny withering 2	0.023
	CRR073320	Tawny withering 3	0.013