Gene detail

Detail information of GWHGAAZE024657

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273742.2	5.3975E-166	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Vitis vinifera]
COG	YP_003830841.1	9E-14	endo-1,3(4)-beta-glucanase
Swissprot	tr\|Q38910\|XTH23_ARATH	9E-151	Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBL	tr\|F6GXE7\|F6GXE7_VITVI	2E-166	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT4G25810.1	5E-120	xyloglucan endotransglycosylase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47164839	47165830	-
GWHAAZE00000007	mRNA	47164839	47165830	-
GWHAAZE00000007	exon	47164839	47165187	-
GWHAAZE00000007	exon	47165286	47165479	-
GWHAAZE00000007	exon	47165567	47165830	-
GWHAAZE00000007	CDS	47165567	47165830	-
GWHAAZE00000007	CDS	47165286	47165479	-
GWHAAZE00000007	CDS	47164839	47165187	-

Transcript Sequence
>GWHTAAZE024691 ATGGCGGTTTCTTCTTCAATTTTATTTGGGTTCATTCTTGTTTCTCTAGTGGTTGCCTCTGCGGCTAACTTCTACCAAGACTTTGATGTCACTTGGGGCGATGGGCGCGGTAAGATACTCAACAATGGCGAACTTCTCACTCTTTCTCTAGACAAAGCCTCTGGCTCTGGTTTTCAATCTAAGAACGAATATATGTTTGGGAAGATTGATATGCAGCTCAAGCTCGTTCCAGGAAACTCAGCCGGGACTGTCACTGCTTATTATTTATCATCACAAGGACCGACCCACGATGAAATAGACTTTGAATTCTTGGGAAATTTGAGCGGCGATCCTTACACTCTTCATACCAACGTGTTCAGCCAAGGCAAAGGAGAGAGAGAGCAACAATTCCATCTTTGGTTTGACCCAACTGCTGATTTCCACACCTACTCCATCCTTTGGAACCCCCAACGCATTATCTTTTCTGTAGATGGCACACCAATCAGAGAGTACAAGAATGCCGAATCAGTTGGTGTTTCATACCCGAAGAACCAACCAATGAGAATATACTCAAGTCTATGGAATGCCGATGATTGGGCTACAAGAGGTGGGCTCGTGAAGACCGACTGGACTCAAGCTCCTTTCACTGCATCTTACAGAAACTTCAAAGCCGAATCTTCCAACACCGGCGCATGGCTCACTGAAGAGTTGGACTCGACGAGCCGGGGGAGATTGAAATGGGTGCAAGACAACTATATGATCTACAATTACTGCACGGACACCAAGAGATATCCTCAAGGTCTACCCAAAGAATGCAACATGTCCTAA

Network for GWHGAAZE024657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0104	GO:0005618 cell wall GOslim:cellular_component GO:0048046 apoplast GOslim:cellular_component GO:0006073 cellular glucan metabolic process GOslim:biological_process GO:0010411 xyloglucan metabolic process GOslim:biological_process GO:0042546 cell wall biogenesis GOslim:biological_process GO:0016762 xyloglucan:xyloglucosyl transferase activity GOslim:molecular_function map04075 Plant hormone signal transduction EAR_family EAR_family

Module ID

Function Annotation

CFinderModule0104

GO:0005618 cell wall GOslim:cellular_component
GO:0048046 apoplast GOslim:cellular_component
GO:0006073 cellular glucan metabolic process GOslim:biological_process
GO:0010411 xyloglucan metabolic process GOslim:biological_process
GO:0042546 cell wall biogenesis GOslim:biological_process
GO:0016762 xyloglucan:xyloglucosyl transferase activity GOslim:molecular_function
map04075 Plant hormone signal transduction
EAR_family EAR_family

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	25	204	5.00E-63
PF06955.13	XET_C	221	265	5.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14504	TCH4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0006073	biological_process	cellular glucan metabolic process
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	105.830
	SRR3591706	second leaf	6.303
	SRR3591707	mature leaf	0.590
	SRR3591708	Shoot apex	25.686
	SRR3591709	Stem	51.804
	SRR3591710	White floral bud	7.621
	SRR3591711	White flower	7.357
	SRR3591712	Green floral bud	6.105
	SRR3591713	Yellow flower	5.079
SRP173429	SRR8316895	Juvenile bud stage	118.930
	SRR8316896	Juvenile bud stage	109.654
	SRR8316897	Juvenile bud stage	109.597
	SRR8316894	Third green stage	13.971
	SRR8316900	Third green stage	29.971
	SRR8316901	Third green stage	78.525
	SRR8316898	Complete white stage	1.275
	SRR8316899	Complete white stage	115.830
	SRR8316903	Complete white stage	1.096
	SRR8316902	Silver flowering stage	15.429
	SRR8316904	Silver flowering stage	2.260
	SRR8316905	Silver flowering stage	1.178
	SRR8316906	Gold flowering stage	5.431
	SRR8316907	Gold flowering stage	13.069
	SRR8316908	Gold flowering stage	9.330
SRP132670	SRR6706286	Control	11.025
	SRR6706287	Light intensity 50%	17.781
	SRR6706288	Light intensity 20%	13.427
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.867
	CNS0095593	Slightly white alabastrum(diploid) 2	79.806
	CNS0095594	Slightly white alabastrum(diploid) 3	78.659
	CNS0095595	Whole white alabastrum(diploid) 2	56.683
	CNS0095596	Whole white alabastrum(diploid) 3	7.455
	CNS0095597	Whole white alabastrum(diploid) 4	40.847
	CNS0095598	Silvery flower (diploied) 1	143.745
	CNS0095599	Silvery flower (diploied) 2	148.200
	CNS0095600	Silvery flower (diploied) 3	65.864
	CNS0095601	Golden flower (diploid) 1	132.965
	CNS0095602	Golden flower (diploid) 2	91.136
	CNS0095603	Golden flower (diploid) 3	86.519
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.846
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.767
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.542
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.402
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.946
	CNS0095610	Silvery flower (tetraploid) 1	2.340
	CNS0095611	Silvery flower (tetraploid) 2	0.347
	CNS0095612	Silvery flower (tetraploid) 3	4.646
	CNS0095613	Golden flower (tetraploid) 1	5.182
	CNS0095614	Golden flower (tetraploid) 2	0.890
	CNS0095615	Golden flower (tetraploid) 3	0.850
CRA001975	CRR073297	Stem 1	33.704
	CRR073298	Stem 2	38.860
	CRR073299	Stem 3	34.353
	CRR073300	Leaf 1	73.157
	CRR073301	Leaf 2	124.131
	CRR073302	Leaf 3	42.930
	CRR073303	Juvenile bud 1	52.393
	CRR073304	Juvenile bud 2	36.890
	CRR073305	Juvenile bud 3	104.936
	CRR073306	Third green 1	10.477
	CRR073307	Third green 2	20.852
	CRR073308	Third green 3	12.608
	CRR073309	Second white 1	2.864
	CRR073310	Second white 2	5.289
	CRR073311	Second white 3	7.894
	CRR073312	Silver flowering 1	21.417
	CRR073313	Silver flowering 2	16.507
	CRR073314	Silver flowering 3	9.927
	CRR073315	Gold flowering 1	183.722
	CRR073316	Gold flowering 2	352.777
	CRR073317	Gold flowering 3	150.658
	CRR073318	Tawny withering 1	74.794
	CRR073319	Tawny withering 2	232.131
	CRR073320	Tawny withering 3	124.656