Detail information of GWHGAAZE024653


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273742.29.1491E-165PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Vitis vinifera]
COGYP_003830841.12E-14endo-1,3(4)-beta-glucanase
Swissprottr|Q38910|XTH23_ARATH6E-151Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBLtr|F6GXE7|F6GXE7_VITVI3E-165Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}
TAIR10AT4G25810.14E-120xyloglucan endotransglycosylase 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4713425447135326-
GWHAAZE00000007mRNA4713425447135326-
GWHAAZE00000007exon4713425447134602-
GWHAAZE00000007exon4713473247134925-
GWHAAZE00000007exon4713506347135326-
GWHAAZE00000007CDS4713506347135326-
GWHAAZE00000007CDS4713473247134925-
GWHAAZE00000007CDS4713425447134602-
Transcript Sequence

Network for GWHGAAZE024653

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0283GO:0042546 cell wall biogenesis GOslim:biological_process
GO:0006073 cellular glucan metabolic process GOslim:biological_process
GO:0010411 xyloglucan metabolic process GOslim:biological_process
GO:0005618 cell wall GOslim:cellular_component
GO:0016762 xyloglucan:xyloglucosyl transferase activity GOslim:molecular_function
GO:0048046 apoplast GOslim:cellular_component
map04075 Plant hormone signal transduction
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function
GO:0005975 carbohydrate metabolic process GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00722.22Glyco_hydro_16252041.20E-62
PF06955.13XET_C2212655.10E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14504TCH4 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0010411biological_processxyloglucan metabolic process
GO:0042546biological_processcell wall biogenesis
GO:0006073biological_processcellular glucan metabolic process
GO:0005618cellular_componentcell wall
GO:0048046cellular_componentapoplast
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf69.961
SRR3591706second leaf2.036
SRR3591707mature leaf0.027
SRR3591708Shoot apex5.444
SRR3591709Stem95.468
SRR3591710White floral bud2.049
SRR3591711White flower3.601
SRR3591712Green floral bud0.554
SRR3591713Yellow flower1.446
SRP173429 SRR8316895Juvenile bud stage 14.698
SRR8316896Juvenile bud stage 5.885
SRR8316897Juvenile bud stage 25.069
SRR8316894Third green stage 0.521
SRR8316900Third green stage 0.484
SRR8316901Third green stage 3.126
SRR8316898Complete white stage 0.267
SRR8316899Complete white stage 4.423
SRR8316903Complete white stage 0.078
SRR8316902Silver flowering stage4.641
SRR8316904Silver flowering stage0.832
SRR8316905Silver flowering stage0.418
SRR8316906Gold flowering stage 0.400
SRR8316907Gold flowering stage 0.714
SRR8316908Gold flowering stage 1.306
SRP132670SRR6706286Control1.028
SRR6706287Light intensity 50%1.343
SRR6706288Light intensity 20%1.926
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.523
CNS0095593Slightly white alabastrum(diploid) 22.778
CNS0095594Slightly white alabastrum(diploid) 34.419
CNS0095595Whole white alabastrum(diploid) 22.439
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 41.229
CNS0095598Silvery flower (diploied) 14.982
CNS0095599Silvery flower (diploied) 25.287
CNS0095600Silvery flower (diploied) 34.916
CNS0095601Golden flower (diploid) 17.480
CNS0095602Golden flower (diploid) 22.990
CNS0095603Golden flower (diploid) 32.392
CNS0095604Slightly white alabastrum(tetraploid) 10.021
CNS0095605Slightly white alabastrum(tetraploid) 20.142
CNS0095606Slightly white alabastrum(tetraploid) 30.138
CNS0095607Whole white alabastrum(tetraploid) 10.108
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.063
CNS0095610Silvery flower (tetraploid) 10.353
CNS0095611Silvery flower (tetraploid) 20.030
CNS0095612Silvery flower (tetraploid) 30.310
CNS0095613Golden flower (tetraploid) 10.085
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.018
CRA001975CRR073297Stem 14.874
CRR073298Stem 21.561
CRR073299Stem 33.858
CRR073300Leaf 11.188
CRR073301Leaf 27.065
CRR073302Leaf 32.919
CRR073303Juvenile bud 11.003
CRR073304Juvenile bud 20.767
CRR073305Juvenile bud 36.185
CRR073306Third green 14.488
CRR073307Third green 211.611
CRR073308Third green 33.824
CRR073309Second white 10.059
CRR073310Second white 20.833
CRR073311Second white 30.000
CRR073312Silver flowering 10.742
CRR073313Silver flowering 20.859
CRR073314Silver flowering 30.479
CRR073315Gold flowering 1162.874
CRR073316Gold flowering 2264.196
CRR073317Gold flowering 354.404
CRR073318Tawny withering 193.872
CRR073319Tawny withering 2122.471
CRR073320Tawny withering 3179.748