Gene detail

Detail information of GWHGAAZE024643

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011069876.1	0	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Sesamum indicum]
COG	YP_005269820.1	5E-20	serine/threonine-protein kinase PrkC
Swissprot	tr\|Q9LSC2\|Y3589_ARATH	4E-103	PTI1-like tyrosine-protein kinase At3g15890
trEMBL	tr\|F6GXA4\|F6GXA4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44590.1}
TAIR10	AT1G52540.1	5E-88	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	46981015	46984326	+
GWHAAZE00000007	mRNA	46981015	46984326	+
GWHAAZE00000007	exon	46981015	46981061	+
GWHAAZE00000007	exon	46981902	46982028	+
GWHAAZE00000007	exon	46982701	46982963	+
GWHAAZE00000007	exon	46983645	46984175	+
GWHAAZE00000007	exon	46984278	46984326	+
GWHAAZE00000007	CDS	46981015	46981061	+
GWHAAZE00000007	CDS	46981902	46982028	+
GWHAAZE00000007	CDS	46982701	46982963	+
GWHAAZE00000007	CDS	46983645	46984175	+
GWHAAZE00000007	CDS	46984278	46984326	+

Transcript Sequence
>GWHTAAZE024677 ATGGGATCTTCCATGAGTTGCTGTGGTGCAGAGAGGGTTGATGAAGGGACGACATATGGTGGAAATAATAAGAGTAGTACTCATCCCTGGAGAATATTCAGCTACAAAGAATTGCATGTTGCAACTAATGGTTTCAGTGAGGAGTATAAACTTGGAGAAGGCGGCTTTGGAAGTATAGCAGTGAAGAAATTGAAATCAATGAATTCAAAAGCAGAGATGGAATTTGCAGTGGAAGTGGAAGTACTAGGGAGAGTAAGGCACAAAAACTTGTTGGGGTTAAGGGGTTATTGTGCTGCTGATAATCAAAGGCTTATAGTGTATGATTATATGCCTAATCTCAGCTTACTCTCTCAACTTCATGGCCGCCATGTTGGTCATGTTCAACTTGATTGGACCAAGAGAATCAAGGTTGCTATTGGCTCTGCTCAAGGCTTATTGTACTTGCACCACGAAGTGACACCCCACATAATCCACAGAGATATAAAAGCAAGCAATGTCCTCTTGGACTCAAACTATGAGCCACTAGTGGCTGATTTTGGCTTTGCAAAGCTAATCCCAGATGGGGTTAGCCACATGACCACAAGGGTCAAGGGCACATTGGGCTACTTAGCCCCAGAATATGCTATGTTAGGCAAAGTCTCTGAAAGCTGTGATGTCTACAGCTTCGGCATTCTTTTGTTAGAAATAATCACGGGGCGAAAGCCAATTGAGAAGCTTGCTAACGGCGTTAAGAGGACAATAACAGAGTGGGCAGAGCCATATATAAGTAAAGGTAGGTTTCGAGACCTTGTTGATCCAAGGCTTAAAGGGGATTTTGATGAGACGCAGTTGAAAAGAGCAATTAATGTGGCAGCATTGTGCGTGCAAAGCGAGGCGAGTAAGAGGCCTAATATGAAGGAGGTGGTGGGGATGCTTAAGGAGTTTGACGGGAGAGGGTTGATGGGAGAGATGAGGATTGAAAGCATTAGACAAGATGAGCCATATACGCGTTATGGGAAAAGAAGGGGTAGAAATTAA

Network for GWHGAAZE024643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	58	304	6.00E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.112
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.108
	SRR3591712	Green floral bud	0.092
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.146
	SRR8316896	Juvenile bud stage	0.111
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.084
	SRR8316901	Third green stage	0.119
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.155
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.056
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.089
	SRR8316907	Gold flowering stage	0.270
	SRR8316908	Gold flowering stage	0.020
SRP132670	SRR6706286	Control	0.032
	SRR6706287	Light intensity 50%	0.050
	SRR6706288	Light intensity 20%	0.040
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.318
	CNS0095593	Slightly white alabastrum(diploid) 2	0.136
	CNS0095594	Slightly white alabastrum(diploid) 3	0.051
	CNS0095595	Whole white alabastrum(diploid) 2	0.207
	CNS0095596	Whole white alabastrum(diploid) 3	0.014
	CNS0095597	Whole white alabastrum(diploid) 4	0.220
	CNS0095598	Silvery flower (diploied) 1	0.042
	CNS0095599	Silvery flower (diploied) 2	0.266
	CNS0095600	Silvery flower (diploied) 3	0.145
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.059
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.709
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.487
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.578
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.149
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.041
	CNS0095610	Silvery flower (tetraploid) 1	0.207
	CNS0095611	Silvery flower (tetraploid) 2	0.361
	CNS0095612	Silvery flower (tetraploid) 3	0.031
	CNS0095613	Golden flower (tetraploid) 1	0.109
	CNS0095614	Golden flower (tetraploid) 2	0.047
	CNS0095615	Golden flower (tetraploid) 3	0.093
CRA001975	CRR073297	Stem 1	0.156
	CRR073298	Stem 2	0.246
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.229
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.086
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.461