Gene detail

Detail information of GWHGAAZE024640

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGD98700.1	0	trehalose-6-phosphate synthase [Camellia sinensis]
COG	YP_006545085.1	8E-110	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
Swissprot	tr\|Q9ZV48\|TPS11_ARATH	0	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
trEMBL	tr\|L7YE99\|L7YE99_CAMSI	0	Trehalose-6-phosphate synthase {ECO:0000313\|EMBL:AGD98700.1}
TAIR10	AT2G18700.1	0	trehalose phosphatase/synthase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	46871423	46873426	+
GWHAAZE00000007	mRNA	46871423	46873426	+
GWHAAZE00000007	exon	46871423	46872933	+
GWHAAZE00000007	exon	46873141	46873426	+
GWHAAZE00000007	CDS	46871423	46872933	+
GWHAAZE00000007	CDS	46873141	46873426	+

Transcript Sequence
>GWHTAAZE024674 ATGTTACCGGTTACTCCGAATCATGGGGTTAGATTTGATCGAGTTTTGTGGCAATCATATGTATCTGCTAATAAGGTTTTTGCAGATAAAGTAATGGAGGTGATAAACCCGGATGAAGATTATGTATGGGTGCATGATTATCATCTTATGGTATTACCCACTTTTTTGAGGAAAAGATTTCATAGGGTTAGATTGGGGTTTTTTCACCATAGCCCATTTCCCTCTTCGGAGATTTACCGGACTTTGCCTATTAGGGATGAGATTTTGAGGGGTTTGTTGAATTGTGATCTCATTGGGTTCCATACATTTGATTATGCTAGGCATTTTCTTTCGTGCTGTCGTAGGATGTTCGGTTTGGATTATAAGTCGAGAAGGGGCTATATTGGGCTGGAATATTACGGTAGGACGGTTAGTATCAAGATTTTACCGGTTGGGATTCATATGGGTCAGCTCGAATCGGTGATGTCTATGAAGAAAACTGCGGAGAAAGTTGTGGAATTGAAGGGGAAATTTGATGGGAAAATTGTAATTTTGGGGGTTGATGATATGGATATGTTTAAGGGTATTAGTTTGAAGTTTTTAGCAATGGGGCAGCTCTTGGAGGATCATCCAGAATATAGGGGAAATGTGGTTCTGGTTCAAATAGTTAACCCGGCAAGGAGTTCGGGTCAAGATATTCAAGAAGTTAAAGATGAGACTAGCATGGTTGTTAGTGAGATCAATAGGAAGTATGGTCGACCTGGGTATGACCCGATTGTGTTCTTGAATGGTCCGGTTTCGACCCAAGACAAGGTCGCTTACTTAGCCATTTCAGAGTGTTGTGTGGTGAATGCTGTAAGGGATGGAATGAATTTGATTCCTTACAAGTACACGGTGTCAAGACAGGGTTGCCCCGATTTTGATACGGCCTTGGGGCTTGATGGGTTGACCCGGACGAGGAAGAGTGTGATTATTGTATCCGAGTTCATTGGGTGCTCCCCTTCTCTGAGCGGGGCGATCCGGGTCAACCCGTGGAACATTGATTGCGTATCTGAGGCAATGAATTTGGCCATCACCATGCCTGAATCCGAGAAGCAAATGCGCCATGAGAAGCACTACAAGTATGTTAGTTCACATGATGTTGCTTATTGGGCTAGGAGCTTTGATCAAGATCTTGAGAGGGCTTGCAGAGAGCACTACCTCAAAAGGTGTTGGGGAATCGGTTTTGGGTTGGGTTTTCGGGTTGTGGCTTTGGGTCCAAACTTTAGGAAGCTCTCTGTTGAGCACATTGTCTCATCTTACAACAAGACTCATAGCCGGTTGATCCTTTTGGACTATGATGGAACCGTAATGCCTCAGGGCTCAGTGGACAAGTCACCAAGCCCTGCCGTCATCGCAGTTCTAAATGGTTTGTGTAGTGATCCGAAGAATGTGGTGTTCATTGTGAGTGGACGAGGAAAGGATTCGCTAAGCAAATGGTTCGCTCCATGTAAAGGACTTGGTCTTTCAGCAGAACATGGATACTTTACAAGGTGGAATGAGGATTCAGAATGGGAATTGAGCATGTTAACAATGGACTTCGAGTGGAAAAAGATAGCACTACCGGTAATGGAGCATTATACGGAAGCAACTGATGGGTCTTTTATAGAGCAAAAGGAAAGCGCGCTTGTGTGGCACCATCAAGAAGCCGACCCAGATTTTGGGTCATGGCAGGCAAAAGAGCTATTTGATCATCTTGAAAATGTGCTCGCAAATGAGCCCGTGGTGGTTAAAAGAGGCCAACACATAGTTGAAGTTAAACCGCAGGTACAATTCTGA

Network for GWHGAAZE024640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.22	Glyco_transf_20	5	386	1.90E-154
PF02358.17	Trehalose_PPase	436	596	2.90E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.120
	SRR3591706	second leaf	5.420
	SRR3591707	mature leaf	11.185
	SRR3591708	Shoot apex	51.533
	SRR3591709	Stem	50.348
	SRR3591710	White floral bud	45.249
	SRR3591711	White flower	184.804
	SRR3591712	Green floral bud	13.075
	SRR3591713	Yellow flower	478.054
SRP173429	SRR8316895	Juvenile bud stage	52.112
	SRR8316896	Juvenile bud stage	49.477
	SRR8316897	Juvenile bud stage	51.018
	SRR8316894	Third green stage	5.516
	SRR8316900	Third green stage	14.708
	SRR8316901	Third green stage	21.007
	SRR8316898	Complete white stage	21.153
	SRR8316899	Complete white stage	31.695
	SRR8316903	Complete white stage	42.146
	SRR8316902	Silver flowering stage	62.284
	SRR8316904	Silver flowering stage	85.609
	SRR8316905	Silver flowering stage	55.293
	SRR8316906	Gold flowering stage	316.447
	SRR8316907	Gold flowering stage	298.163
	SRR8316908	Gold flowering stage	269.453
SRP132670	SRR6706286	Control	22.623
	SRR6706287	Light intensity 50%	17.335
	SRR6706288	Light intensity 20%	13.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.653
	CNS0095593	Slightly white alabastrum(diploid) 2	22.285
	CNS0095594	Slightly white alabastrum(diploid) 3	23.486
	CNS0095595	Whole white alabastrum(diploid) 2	24.104
	CNS0095596	Whole white alabastrum(diploid) 3	12.762
	CNS0095597	Whole white alabastrum(diploid) 4	15.598
	CNS0095598	Silvery flower (diploied) 1	101.079
	CNS0095599	Silvery flower (diploied) 2	121.662
	CNS0095600	Silvery flower (diploied) 3	209.909
	CNS0095601	Golden flower (diploid) 1	172.561
	CNS0095602	Golden flower (diploid) 2	365.024
	CNS0095603	Golden flower (diploid) 3	347.590
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.996
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.306
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.207
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.350
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.289
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.590
	CNS0095610	Silvery flower (tetraploid) 1	211.354
	CNS0095611	Silvery flower (tetraploid) 2	240.520
	CNS0095612	Silvery flower (tetraploid) 3	106.082
	CNS0095613	Golden flower (tetraploid) 1	223.464
	CNS0095614	Golden flower (tetraploid) 2	258.101
	CNS0095615	Golden flower (tetraploid) 3	790.829
CRA001975	CRR073297	Stem 1	47.394
	CRR073298	Stem 2	47.711
	CRR073299	Stem 3	43.987
	CRR073300	Leaf 1	34.598
	CRR073301	Leaf 2	47.404
	CRR073302	Leaf 3	28.035
	CRR073303	Juvenile bud 1	32.828
	CRR073304	Juvenile bud 2	28.825
	CRR073305	Juvenile bud 3	57.708
	CRR073306	Third green 1	34.634
	CRR073307	Third green 2	30.435
	CRR073308	Third green 3	31.844
	CRR073309	Second white 1	32.801
	CRR073310	Second white 2	44.763
	CRR073311	Second white 3	69.718
	CRR073312	Silver flowering 1	170.865
	CRR073313	Silver flowering 2	106.468
	CRR073314	Silver flowering 3	128.741
	CRR073315	Gold flowering 1	23.546
	CRR073316	Gold flowering 2	44.872
	CRR073317	Gold flowering 3	34.091
	CRR073318	Tawny withering 1	70.534
	CRR073319	Tawny withering 2	107.114
	CRR073320	Tawny withering 3	55.740