Detail information of GWHGAAZE024622


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010268503.19.61634E-72PREDICTED: nucleoporin Nup43 [Nelumbo nucifera]
Swissprottr|Q24JJ9|NUP43_ARATH2E-54Nuclear pore complex protein NUP43 {ECO:0000303|PubMed:21189294}
trEMBLtr|M5XD93|M5XD93_PRUPE2E-69Uncharacterized protein {ECO:0000313|EMBL:EMJ23426.1}
TAIR10AT4G30840.11E-32Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4642505646426617-
GWHAAZE00000007mRNA4642505646426617-
GWHAAZE00000007exon4642505646425313-
GWHAAZE00000007exon4642623146426617-
GWHAAZE00000007CDS4642623146426617-
GWHAAZE00000007CDS4642505646425313-
Transcript Sequence

Network for GWHGAAZE024622

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14305NUP43 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.670
SRR3591706second leaf5.884
SRR3591707mature leaf5.706
SRR3591708Shoot apex18.786
SRR3591709Stem5.618
SRR3591710White floral bud11.443
SRR3591711White flower34.885
SRR3591712Green floral bud14.973
SRR3591713Yellow flower31.759
SRP173429 SRR8316895Juvenile bud stage 8.457
SRR8316896Juvenile bud stage 13.137
SRR8316897Juvenile bud stage 4.834
SRR8316894Third green stage 4.883
SRR8316900Third green stage 15.996
SRR8316901Third green stage 10.419
SRR8316898Complete white stage 2.726
SRR8316899Complete white stage 10.608
SRR8316903Complete white stage 4.150
SRR8316902Silver flowering stage8.975
SRR8316904Silver flowering stage12.858
SRR8316905Silver flowering stage8.205
SRR8316906Gold flowering stage 21.292
SRR8316907Gold flowering stage 22.241
SRR8316908Gold flowering stage 25.900
SRP132670SRR6706286Control21.291
SRR6706287Light intensity 50%22.483
SRR6706288Light intensity 20%21.685
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.542
CNS0095593Slightly white alabastrum(diploid) 24.026
CNS0095594Slightly white alabastrum(diploid) 34.909
CNS0095595Whole white alabastrum(diploid) 24.258
CNS0095596Whole white alabastrum(diploid) 33.378
CNS0095597Whole white alabastrum(diploid) 43.203
CNS0095598Silvery flower (diploied) 17.000
CNS0095599Silvery flower (diploied) 23.304
CNS0095600Silvery flower (diploied) 312.430
CNS0095601Golden flower (diploid) 16.777
CNS0095602Golden flower (diploid) 212.083
CNS0095603Golden flower (diploid) 310.152
CNS0095604Slightly white alabastrum(tetraploid) 15.104
CNS0095605Slightly white alabastrum(tetraploid) 25.342
CNS0095606Slightly white alabastrum(tetraploid) 312.724
CNS0095607Whole white alabastrum(tetraploid) 11.539
CNS0095608Whole white alabastrum(tetraploid) 22.115
CNS0095609Whole white alabastrum(tetraploid) 311.325
CNS0095610Silvery flower (tetraploid) 112.305
CNS0095611Silvery flower (tetraploid) 215.243
CNS0095612Silvery flower (tetraploid) 315.898
CNS0095613Golden flower (tetraploid) 18.652
CNS0095614Golden flower (tetraploid) 211.878
CNS0095615Golden flower (tetraploid) 312.080
CRA001975CRR073297Stem 122.182
CRR073298Stem 224.386
CRR073299Stem 317.533
CRR073300Leaf 122.427
CRR073301Leaf 220.640
CRR073302Leaf 320.473
CRR073303Juvenile bud 117.601
CRR073304Juvenile bud 213.286
CRR073305Juvenile bud 319.586
CRR073306Third green 14.215
CRR073307Third green 24.082
CRR073308Third green 33.698
CRR073309Second white 126.799
CRR073310Second white 218.980
CRR073311Second white 325.191
CRR073312Silver flowering 120.081
CRR073313Silver flowering 221.058
CRR073314Silver flowering 315.652
CRR073315Gold flowering 112.156
CRR073316Gold flowering 218.100
CRR073317Gold flowering 314.120
CRR073318Tawny withering 111.882
CRR073319Tawny withering 26.543
CRR073320Tawny withering 312.420