Gene detail

Detail information of GWHGAAZE024598

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001189873.1	1.90898E-86	ribosomal protein S5/Elongation factor G/III/V family protein [Arabidopsis thaliana]
COG	NP_579741.1	6E-21	elongation factor EF-2
Swissprot	tr\|P28996\|EF2_PARKE	1E-50	Elongation factor 2
trEMBL	tr\|F4JB06\|F4JB06_ARATH	7E-87	Ribosomal protein S5/Elongation factor G/III/V family protein {ECO:0000313\|EMBL:AEE75261.1}
TAIR10	AT3G12915.2	3E-75	Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45857599	45860234	+
GWHAAZE00000007	mRNA	45857599	45860234	+
GWHAAZE00000007	exon	45857599	45857648	+
GWHAAZE00000007	exon	45857752	45857810	+
GWHAAZE00000007	exon	45858288	45858516	+
GWHAAZE00000007	exon	45858854	45860234	+
GWHAAZE00000007	CDS	45857599	45857648	+
GWHAAZE00000007	CDS	45857752	45857810	+
GWHAAZE00000007	CDS	45858288	45858516	+
GWHAAZE00000007	CDS	45858854	45860234	+

Transcript Sequence
>GWHTAAZE024632 TTTGGGTTTTCTAAAGAGGAGGCTGTGGGGATAGGGCTGAGGTGCCCTGGTTTGGAGAAGAGGATAATTCCTAGGCATATTGAAGGAGGCTGTGGAGTGTGGAGAGTAGACGGGGAATCAGCATATCAACGCCTGAGGAATATAGTTGAAGAAATGAACACAGTCCTTGCCACTTACGAGGATCATCCTGTCAGAGGGGATGATGTTCGGGTTTACCCCAAGAAAGCAACAGTCGCTTTCTCCTCCGGGCTGCAGGATTGGGGTTTCACCCTGTCTGAATTTGCCAAGTTGTACTTGTCGAAATTCGGGGTGGGCGAAGCTAAGATGATGGAGAGGCTGTTGCTCCGGAAAACAAAATGCTTAAAAGGCCGAGAATTGATCATCAATGTTCTGAAGCACTGGTTACCACTAGGGGAGGCCCTCCTAAGAACGGTAGTGGATAAGCTACCATCACCCTTCGAAAGCCAGCAACATAGGGTGCACCACTTGTATACCGGACCGCTCGGTGATCCCTATGCTGAAGCAATTAGGAAATGCAATCCGAGTGGGAGCGTAGTAATGGTATACGTATCGAACTCCCTCTGGATGACAACACATCACCACAAGAAGAGATGTGCGCTTGCTCGTATATTTTCAGGAAGGCTAACCGCTGGTATGAAGGTCAGATTGGTGTCCCCTCGAGGGGGTGAGGAAGAGGAGGAAGGTGGTGGCGCATTTGCTTTGCATTTGGAACACATTAAGAGAATTGGCACCTGGAAAAGGGACCAACTGCATTATGTAACAGAGGTAAAGTGTGGCAACATAGCTGCCATTTACGTGGCCTCGGGCCAGCTCATCTCGAAATGCACCCTTGTGGCAGATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGGTGGTGGCCTCCTCCTCCTCGATCAGCAACCCCATCCAATTAGGTCGATGCAACTTGATGTTCATGATGAAGTTGTGGCAGCAGATGCTACTCGAGAGACAGTATTAAAGAGATCGAGCCAGGTCCTAATTTACCACAACAAGGACACAGAATTCTCTGTGACGGCCAGACCTTTAGATGAAAACATGATAGAAGCTATTGAAAAGGGGCAGTCAAAACAATGGAAGAAAATGGTGGGAGATGAACTTGGGTGGGACCCTAAAGTTTCTCACAGCAGAATCTGTTCCAGCGGACCAAACTTGCTGCTTGACTGTTCTAAGGGGGGTCTCAATTTAGAGTACAAGAAAACTCTTGAAGACGCCTTCCAACAGGCAACCCACCATGGGGCATTGGCCGGTAAAATGCTTAGGGGTGTTTGCTTCGAAGTGCATGAAGAGAAGTTCAGTGGTGGTTACGAAGAACTCACCCGTGTCTCCAAACTCGACCAACTACTCCGGGCGGCTCAACTGAGGGCCCACCCTTGCCTCCTAGAGAAATTTTATCGATTGGAGATACAACAAACTCCTCGTGCAAGTCTTTCACGTGTCTCCAATGCAATATATCAAATGCGGGGAAGAGTTTTTCAGCAAGAAGAGGAAGAAGATTCTTACTTCTACACAGTGAGGGGTTACATCCCCATCAACAAAAGGAACAATATTTTCAATCTCATTGCAGAGGCTACAGATGGAACTGGGCGCACAGACCTAAAGTTTGATCACTGGGAACAAGTTTCCTCGGATCCTATATGA

Network for GWHGAAZE024598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00679.25	EFG_C	486	571	4.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03234	EEF2	AMPK signaling pathway	map04152
K03234	EEF2	Oxytocin signaling pathway	map04921

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.198
	SRR3591706	second leaf	0.281
	SRR3591707	mature leaf	0.228
	SRR3591708	Shoot apex	0.353
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.114
	SRR3591711	White flower	0.077
	SRR3591712	Green floral bud	0.246
	SRR3591713	Yellow flower	0.129
SRP173429	SRR8316895	Juvenile bud stage	0.247
	SRR8316896	Juvenile bud stage	0.134
	SRR8316897	Juvenile bud stage	0.096
	SRR8316894	Third green stage	0.148
	SRR8316900	Third green stage	0.169
	SRR8316901	Third green stage	0.076
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.083
	SRR8316903	Complete white stage	0.096
	SRR8316902	Silver flowering stage	0.077
	SRR8316904	Silver flowering stage	0.200
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.827
	SRR8316907	Gold flowering stage	0.913
	SRR8316908	Gold flowering stage	0.052
SRP132670	SRR6706286	Control	0.082
	SRR6706287	Light intensity 50%	0.099
	SRR6706288	Light intensity 20%	0.097
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.081
	CNS0095593	Slightly white alabastrum(diploid) 2	0.119
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.141
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.088
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.013
	CNS0095600	Silvery flower (diploied) 3	0.187
	CNS0095601	Golden flower (diploid) 1	0.032
	CNS0095602	Golden flower (diploid) 2	0.176
	CNS0095603	Golden flower (diploid) 3	0.078
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.219
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.276
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.055
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.860
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.229
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.607
	CNS0095610	Silvery flower (tetraploid) 1	0.058
	CNS0095611	Silvery flower (tetraploid) 2	0.288
	CNS0095612	Silvery flower (tetraploid) 3	0.184
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.042
	CNS0095615	Golden flower (tetraploid) 3	0.011
CRA001975	CRR073297	Stem 1	0.311
	CRR073298	Stem 2	0.263
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.147
	CRR073301	Leaf 2	0.091
	CRR073302	Leaf 3	0.045
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.070
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.359
	CRR073312	Silver flowering 1	0.002
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.003
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.017
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.059
	CRR073320	Tawny withering 3	0.210