Gene detail

Detail information of GWHGAAZE024597

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD70008.1	2.9791E-164	WRKY transcription factor [Vitis pseudoreticulata]
Swissprot	tr\|P59583\|WRK32_ARATH	8E-114	Probable WRKY transcription factor 32
trEMBL	tr\|D4P3Y2\|D4P3Y2_9ROSI	1E-164	WRKY transcription factor {ECO:0000313\|EMBL:ADD70008.1}
TAIR10	AT4G30935.1	1E-94	WRKY DNA-binding protein 32

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45840582	45844593	+
GWHAAZE00000007	mRNA	45840582	45844593	+
GWHAAZE00000007	exon	45840582	45841166	+
GWHAAZE00000007	exon	45841417	45841610	+
GWHAAZE00000007	exon	45844236	45844593	+
GWHAAZE00000007	CDS	45840582	45841166	+
GWHAAZE00000007	CDS	45841417	45841610	+
GWHAAZE00000007	CDS	45844236	45844593	+

Transcript Sequence
>GWHTAAZE024631 ATGCTCAAACTCGTACGCAAGCTTTGCCTTCCTCATCACCTACTATGGTTGCACAATCCAATTTCATCTGCCCCAAGCCCAACTCTGAATGAGCACCGAGTTTCATCTGTATCTAACAGTAACAGCACGTGTGTGGCAGAAATGGACCTGAAGAATTCTTCTGATCGTCGAATTGGACCCACTTTACGCATTGTTAGGACCCCTTCCACTGACGGTTACAATTGGCGGAAGTACGGTCAGAAGCAAGTGAAGATCCCTCAAGGTTATCGAAGCTATTACAAGTGCACATATTCAGAATGTTATGCTAAAAAGATCGAGTGCTGTGATCATTTTAATTGTGTCATAGAGATCATATACAAGGGTCAGCACAATCATGAGCCCCCTCGAAAAGTAAATTACGCAAGGGAAAGTGGGCTCGCATTATCTGTTGTCGAGAGCAATATTTCAAATCTAGCCACTTCTTCAAAAGAACCTAAACAAGAAGTACCCGAAACATACCGACAGAACTCAAGTGGGTCCGATGGTAACGCTGAAGTTATTGCCAAGGAGCAGCATGTGGATGAACCAGAACCAAAGCGAAGGCAATTTGTAACTTCATTTTCCACTGTTTGGATAACCAGAGTGAAGAAAAGCAGCCCAGCATCTGAAGGTGCTCTGTTTAAACCTGGCAAAAAACCCAAGTTAGTTGTGCATGCAGCTGGTGATGTTGGAATCTCAGGAGACGGCTATAGGTGGAGAAAATATGGGCAAAAGATGGTGAAGGGAAATCCTCATCCCAGGAACTACTACAGATGCACATCAGCAGGATGCCCGGTTCGAAAACACATAGAGAGGGCAATAGATAACACAAATGCTCTCATAATAACATACAAAGGAAAACACGACCATGATATGCCTGTCCCTAAGAAACGGCATGGCCCACCGAGTGCCTGCCTCGTTGCTGCCTCTGCACCCGCTTCAATGAACGACACGCAGTTCAAGAGAACTAAACCAGTGCAGAGCCAAAAGTCTGCAACCCAATGGTCTGTTGACATGGAAGGTGAATTGACCGGCGAAGCTTTAGACCTTGGAGGGGAGAAGGCTATGGAATCGGCTCGAACCCTTTTGAGCATTGGGTTCGAAATCAAGCCTTGTTGA

Network for GWHGAAZE024597

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	71	126	2.00E-15
PF03106.16	WRKY	241	296	1.90E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.625
	SRR3591706	second leaf	4.614
	SRR3591707	mature leaf	8.979
	SRR3591708	Shoot apex	12.834
	SRR3591709	Stem	27.137
	SRR3591710	White floral bud	15.780
	SRR3591711	White flower	21.152
	SRR3591712	Green floral bud	12.912
	SRR3591713	Yellow flower	11.892
SRP173429	SRR8316895	Juvenile bud stage	10.713
	SRR8316896	Juvenile bud stage	10.958
	SRR8316897	Juvenile bud stage	4.474
	SRR8316894	Third green stage	5.781
	SRR8316900	Third green stage	9.548
	SRR8316901	Third green stage	12.242
	SRR8316898	Complete white stage	4.668
	SRR8316899	Complete white stage	28.566
	SRR8316903	Complete white stage	11.626
	SRR8316902	Silver flowering stage	7.298
	SRR8316904	Silver flowering stage	7.901
	SRR8316905	Silver flowering stage	2.900
	SRR8316906	Gold flowering stage	10.684
	SRR8316907	Gold flowering stage	11.076
	SRR8316908	Gold flowering stage	13.395
SRP132670	SRR6706286	Control	15.504
	SRR6706287	Light intensity 50%	15.068
	SRR6706288	Light intensity 20%	15.301
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.983
	CNS0095593	Slightly white alabastrum(diploid) 2	14.066
	CNS0095594	Slightly white alabastrum(diploid) 3	12.011
	CNS0095595	Whole white alabastrum(diploid) 2	9.980
	CNS0095596	Whole white alabastrum(diploid) 3	5.803
	CNS0095597	Whole white alabastrum(diploid) 4	11.482
	CNS0095598	Silvery flower (diploied) 1	16.904
	CNS0095599	Silvery flower (diploied) 2	8.900
	CNS0095600	Silvery flower (diploied) 3	14.315
	CNS0095601	Golden flower (diploid) 1	13.755
	CNS0095602	Golden flower (diploid) 2	15.967
	CNS0095603	Golden flower (diploid) 3	15.184
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.526
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.313
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.600
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.208
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.369
	CNS0095610	Silvery flower (tetraploid) 1	10.013
	CNS0095611	Silvery flower (tetraploid) 2	10.001
	CNS0095612	Silvery flower (tetraploid) 3	6.243
	CNS0095613	Golden flower (tetraploid) 1	5.960
	CNS0095614	Golden flower (tetraploid) 2	7.131
	CNS0095615	Golden flower (tetraploid) 3	4.114
CRA001975	CRR073297	Stem 1	18.361
	CRR073298	Stem 2	15.363
	CRR073299	Stem 3	17.077
	CRR073300	Leaf 1	13.983
	CRR073301	Leaf 2	14.121
	CRR073302	Leaf 3	11.058
	CRR073303	Juvenile bud 1	12.601
	CRR073304	Juvenile bud 2	7.280
	CRR073305	Juvenile bud 3	16.467
	CRR073306	Third green 1	2.106
	CRR073307	Third green 2	5.166
	CRR073308	Third green 3	4.714
	CRR073309	Second white 1	4.404
	CRR073310	Second white 2	5.681
	CRR073311	Second white 3	5.934
	CRR073312	Silver flowering 1	3.170
	CRR073313	Silver flowering 2	3.752
	CRR073314	Silver flowering 3	1.923
	CRR073315	Gold flowering 1	11.421
	CRR073316	Gold flowering 2	11.726
	CRR073317	Gold flowering 3	5.284
	CRR073318	Tawny withering 1	24.208
	CRR073319	Tawny withering 2	25.593
	CRR073320	Tawny withering 3	24.255