Gene detail

Detail information of GWHGAAZE024589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABJ91216.1	0	CBL-interacting protein kinase 9 [Populus trichocarpa]
COG	YP_002432751.1	6E-39	serine/threonine protein kinase
Swissprot	tr\|O65554\|CIPK6_ARATH	0	CBL-interacting serine/threonine-protein kinase 6
trEMBL	tr\|A0MNJ6\|A0MNJ6_POPTR	0	CBL-interacting protein kinase 9 {ECO:0000313\|EMBL:ABJ91216.1}
TAIR10	AT4G30960.1	1E-179	SOS3-interacting protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45726768	45729011	-
GWHAAZE00000007	mRNA	45726768	45729011	-
GWHAAZE00000007	exon	45728666	45729011	-
GWHAAZE00000007	exon	45728022	45728425	-
GWHAAZE00000007	exon	45726768	45727609	-
GWHAAZE00000007	five_prime_UTR	45728707	45729011	-
GWHAAZE00000007	CDS	45728666	45728706	-
GWHAAZE00000007	CDS	45728022	45728425	-
GWHAAZE00000007	CDS	45726768	45727609	-

Transcript Sequence
>GWHTAAZE024623 ATAAAGATCAAAAAATCTCAATTGACATCTACTTTCTGCAAACCGTAGAGAGAAAGCGTTTTGGAGATAGAAATCTGTTGGTTTTTAGAGAGAGAAAGAGATAGACTGTTCTACAGGGGAATGCAGAGAGATGAGAGGAATTTCGTTGTATAGCTGTGGACGGACTAAAAACATCGTCGGCGGCAGGAATTGCCACCGGAAGCACGTCGAAGACGGGTGAACATTACCGTAAACCACCACTCCCGGCGCCTCCTCCAAAATTTCCCCTTTTTCTCGGCTCCTCGAAGGAATTCTGCACCAGGCAAATGGCGACGGAGGACAGGAACAACGGTGTTCTCAACGGCAGGTATGAGCTCGGCCGGCAGCTAGGGCACGGAACATTCGCGAAGGTGTACCACGCGCGGGATATTCGTTCAGGGAAGAGCGTGGCGATGAAGATCGTTGGTAAAGAGAAAGTGATTAAGGTTGGAATGATGGAGCAAGTTAAGCGAGAAATATCGGTGATGAATATGGTCCGGCATCCAAACATTGTTGAACTCAACGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTCGTTCGTGGAGGTGAATTGTTTAACAAGATTGCCAAAGGGAGGCTCCGGGAAGAGGTGGCCAGGAGTTATTTCCAGCAGCTGATCTCCGCCGTGGAGTTCTGCCATAGCCGCGGTGTTTACCACCGCGACCTCAAGCCGGAGAATCTCTTATTAGATGAAGAAGGTAATTTGAAGGTGACGGATTTCGGACTCAGTGCGTTCTCCGACCATCTCCGGCAGGATGGATTGTTGCACACCACGTGTGGAACACCAGCATACGTTGCACCGGAGGTGATCGGAAAAAAAGGATATGACGGAGCAAAAGCCGATATATGGTCATGTGGTGTCATTTTATTCGTCCTTTTGGCCGGATTCTTACCCTTTCAGGACGATAACATTGTTGCAATGTATAGAAAGATCTACAGAGGAGATTTCAAGTGCCCGCCGTGGTTCTCATCCGAGGCTCGTCGATTAGTCACAAAGCTATTAGATCCGAATCCGAGCAGTCGGATCACCAGTGCTAAAATCATGGAATCGTCGTGGTTCAAAAAGACAGTACCAAAAATTGTGAAATGTAAGGAAGAGCAACAGTTTCTTGCCGAAGAGACATGTACATGGAAAGTGAAAGAAGCAGAGACATTAAACGCATTTCACATAATTTCGTTATCGGAAGGATTCAATTTATCGCCATTGTTTGAGGAAAAGAAAAGAGAGGAGAAAAAGGAGATAAGATTTGCAACAACAAAACCAGCTAGCAGTGTGATATCGAAGCTGGAGGAGGTGGCGAAGGCGGTGAAATTCAGCATCAAGAAGAGCGATTCATGTGTGAGATTACAGGGATTGGAGAATGGGAGAAAGGGGAAATTGGCAATTGCGGCAGACATATTTGCCCTAGCGCCATCGTTTTTGGTGGTGGAAGTGAAGAAATCGAGTGGTGATACTTTGGAGTACAACCAGTTCTGCAGTAAAGAGCTCCGGCCGGCGCTGAAGGACATTGTATGGACGTCGCCAGATAATTCGTCGTGA

Network for GWHGAAZE024589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	15	269	1.30E-73
PF03822.15	NAF	299	358	2.60E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0007165	biological_process	signal transduction
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	158.116
	SRR3591706	second leaf	108.825
	SRR3591707	mature leaf	142.842
	SRR3591708	Shoot apex	89.671
	SRR3591709	Stem	204.049
	SRR3591710	White floral bud	345.995
	SRR3591711	White flower	314.957
	SRR3591712	Green floral bud	72.196
	SRR3591713	Yellow flower	256.559
SRP173429	SRR8316895	Juvenile bud stage	30.057
	SRR8316896	Juvenile bud stage	27.177
	SRR8316897	Juvenile bud stage	14.237
	SRR8316894	Third green stage	14.331
	SRR8316900	Third green stage	25.408
	SRR8316901	Third green stage	23.390
	SRR8316898	Complete white stage	137.278
	SRR8316899	Complete white stage	40.250
	SRR8316903	Complete white stage	280.625
	SRR8316902	Silver flowering stage	111.589
	SRR8316904	Silver flowering stage	118.073
	SRR8316905	Silver flowering stage	66.501
	SRR8316906	Gold flowering stage	183.370
	SRR8316907	Gold flowering stage	174.775
	SRR8316908	Gold flowering stage	142.906
SRP132670	SRR6706286	Control	56.365
	SRR6706287	Light intensity 50%	70.168
	SRR6706288	Light intensity 20%	43.021
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.061
	CNS0095593	Slightly white alabastrum(diploid) 2	38.880
	CNS0095594	Slightly white alabastrum(diploid) 3	68.688
	CNS0095595	Whole white alabastrum(diploid) 2	35.558
	CNS0095596	Whole white alabastrum(diploid) 3	32.368
	CNS0095597	Whole white alabastrum(diploid) 4	53.646
	CNS0095598	Silvery flower (diploied) 1	168.736
	CNS0095599	Silvery flower (diploied) 2	138.507
	CNS0095600	Silvery flower (diploied) 3	134.231
	CNS0095601	Golden flower (diploid) 1	177.983
	CNS0095602	Golden flower (diploid) 2	139.418
	CNS0095603	Golden flower (diploid) 3	139.331
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.399
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.302
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.046
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.583
	CNS0095608	Whole white alabastrum(tetraploid) 2	59.719
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.513
	CNS0095610	Silvery flower (tetraploid) 1	171.444
	CNS0095611	Silvery flower (tetraploid) 2	153.090
	CNS0095612	Silvery flower (tetraploid) 3	427.738
	CNS0095613	Golden flower (tetraploid) 1	117.209
	CNS0095614	Golden flower (tetraploid) 2	135.770
	CNS0095615	Golden flower (tetraploid) 3	195.402
CRA001975	CRR073297	Stem 1	61.569
	CRR073298	Stem 2	49.004
	CRR073299	Stem 3	59.892
	CRR073300	Leaf 1	22.760
	CRR073301	Leaf 2	24.479
	CRR073302	Leaf 3	16.873
	CRR073303	Juvenile bud 1	28.013
	CRR073304	Juvenile bud 2	58.326
	CRR073305	Juvenile bud 3	19.191
	CRR073306	Third green 1	332.080
	CRR073307	Third green 2	303.519
	CRR073308	Third green 3	359.592
	CRR073309	Second white 1	183.650
	CRR073310	Second white 2	247.108
	CRR073311	Second white 3	203.751
	CRR073312	Silver flowering 1	191.957
	CRR073313	Silver flowering 2	150.645
	CRR073314	Silver flowering 3	198.980
	CRR073315	Gold flowering 1	13.956
	CRR073316	Gold flowering 2	32.420
	CRR073317	Gold flowering 3	32.004
	CRR073318	Tawny withering 1	146.793
	CRR073319	Tawny withering 2	324.172
	CRR073320	Tawny withering 3	163.733