Gene detail

Detail information of GWHGAAZE024576

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270833.2	0	PREDICTED: two-component response regulator ARR12 [Vitis vinifera]
COG	YP_001546796.1	6E-17	two component transcriptional regulator
Swissprot	tr\|P62598\|ARR12_ARATH	2E-126	Two-component response regulator ARR12
trEMBL	tr\|A0A068UNX6\|A0A068UNX6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313\|EMBL:CDP10195.1}
TAIR10	AT2G25180.1	2E-103	response regulator 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45415514	45420251	+
GWHAAZE00000007	mRNA	45415514	45420251	+
GWHAAZE00000007	exon	45415514	45415652	+
GWHAAZE00000007	exon	45416509	45416661	+
GWHAAZE00000007	exon	45417184	45417555	+
GWHAAZE00000007	exon	45417817	45417917	+
GWHAAZE00000007	exon	45418251	45419360	+
GWHAAZE00000007	exon	45420180	45420251	+
GWHAAZE00000007	CDS	45415514	45415652	+
GWHAAZE00000007	CDS	45416509	45416661	+
GWHAAZE00000007	CDS	45417184	45417555	+
GWHAAZE00000007	CDS	45417817	45417917	+
GWHAAZE00000007	CDS	45418251	45419360	+
GWHAAZE00000007	CDS	45420180	45420251	+

Transcript Sequence
>GWHTAAZE024610 ATGACTGTAGAGGAAATTAGAGGGAATTTGTGGGATGCAACTGATAATTTCCCAGTGGGTATGCGTGTTCTTGCGGTTGACGATGACCCTACTTGTTTGAAGTTATTAGATTTTCTTCTAAGGAAATGCCAGTATCAGGTTACGACGACAAGTCAGTCGAGAACGGCGTTGAAGATGTTAAGAGAAAACCGAAATAGATTCGACCTGATCATTAGTGATGTCTATATGCCGGACATGGATGGTTTTAAGCTACTTGAGCTTGTTGGTCTGGAAATGGACCTACCTGTCATCATGTTGTCAGCAAACAGCGATCCTAAACTTGTAATGAAGGGGATCACACATGGTGCTTGTGACTATCTAGTGAAGCCTGTTCGACTCGAAGAGCTGAGGAACATATGGCAACATGTAATCCGTAGAAAGAAGTTTGACCCCAAGAGTCAAAACAATCCTACGGCTCAAGAAGAAAGTGAAAGTGGAGAAGGACCATTAGGTAACAATGACCAGAATGGGAAGGTCAGTCGAAAAAGAAAGGATGAAGAAGAAGACGGTGACGATAACGGGCATGAAAATGAGGACTCGGGTACACAGAAGAGGCCTCGGGTTGTTTGGTCCATTGAGCTTCATAGGAAGTTTGTTGCGGCTGTTAATCAATTGGGCATTGATAAGGCTTTTCCTAAAAGGATTCTTGATATGATGAACGTTGAAGGGCTCACTCGGGAAAATGTGGCAAGCCATCTCCAGGCAGGAATCTTTCCCTTTGCTTTTAAATATAGGCTTTATCTCAAAAGGATCAGTTCTGTGGCATCCCATCAAGCCAACATGGTTGCTGTATTAGGGGCTAAAGACACGTCTTATTTTCGCATGGGTTCACTGGATGGACTCGGTGATTTTCGAACATTTTCTTCATCAGCGCAGATTTCAAACACTGCCCTATCATCATATCAACCTTCTGGAATCCTCGGTCGACTAAATAGTCCAGCTGGCTTGAACCTCCGTCACCAAAATTCAAGTAATTCCATCAATGCCCTAGGGAAGTTCCAGCCGGTTGTTTCACCAGCAAGCCATAACGCAAGTTTGTTTCAAGGACTCAGACCCGTTAATCAGTTGCAGCAGAGCACGTCCACGACCGCCATTGGGGAATTTAATTCCATAGATGACCAAAGATTATTTATGGCAGGTAGTACCTTCACGGACACAAAGGTGACAGTTGGTAGCTGTAGCAACTCCCTAGCCGCTGCCCCCTCAAGCAATCCTTTGGTGCCACAGGGGAATCATCAGTCGTCTCTTGAAGTGGCTTCTTTGAATTCAGAATCATTTTCCGTCAGTGGTTCTTCTGTTTTAATGGATAGTTCTAGATGTAATGAGAATTGGAAAAATACCATTCAGTTATCAAAATTTCCATCAAACACGTTACCATTGAGTGAACCTTTCAATCAAGATCACTTTTCTTGCTACAATAGTTCTTCGACTCACCATCTTCAGAACAACCCAATTGATTTTTCTTCAAATACTATGGTTTCCGCACCAGTTCAAGATTCTGAATCTCGAGAAGGCTTGTTTGGTGACATTGTTCAAAATGTGAACCAAACTCAAAACCAAAGACGTGGAATCCAAGAACATGATTATACCCACAACTCAAATAATTCCTTCAGTGCGTTAAGCCAAAGTCTAAACCAAAATAATGCGTTCTACAATAGAAGAATGGGCATCTCTTTGGTTGGTCAATTGAATACCGGTGCTTTAAACCCTTTGCAGCATGCTAAGGTTGAGAAATCAACTATGGGTTTCGATTTGGAGCAAACAAAGTCAGTTGGTGGTATGGTTCATCATGGTTATGATTCTTTGGATGATCTAATGCATGCAATGATGAAAAGGGAGCAAGATGGAGCAGTGCTAATGGGTGGAGAATTCGAATTTGATCCTTACGCCTTTGGGTCGTGTATATGA

Network for GWHGAAZE024576

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	23	132	4.00E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.534
	SRR3591706	second leaf	10.619
	SRR3591707	mature leaf	14.036
	SRR3591708	Shoot apex	10.864
	SRR3591709	Stem	49.541
	SRR3591710	White floral bud	12.110
	SRR3591711	White flower	10.206
	SRR3591712	Green floral bud	13.337
	SRR3591713	Yellow flower	3.021
SRP173429	SRR8316895	Juvenile bud stage	4.489
	SRR8316896	Juvenile bud stage	5.054
	SRR8316897	Juvenile bud stage	3.229
	SRR8316894	Third green stage	2.890
	SRR8316900	Third green stage	4.594
	SRR8316901	Third green stage	4.889
	SRR8316898	Complete white stage	1.182
	SRR8316899	Complete white stage	12.386
	SRR8316903	Complete white stage	1.797
	SRR8316902	Silver flowering stage	0.363
	SRR8316904	Silver flowering stage	0.590
	SRR8316905	Silver flowering stage	0.258
	SRR8316906	Gold flowering stage	0.628
	SRR8316907	Gold flowering stage	0.448
	SRR8316908	Gold flowering stage	0.519
SRP132670	SRR6706286	Control	5.068
	SRR6706287	Light intensity 50%	6.227
	SRR6706288	Light intensity 20%	5.630
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.837
	CNS0095593	Slightly white alabastrum(diploid) 2	4.256
	CNS0095594	Slightly white alabastrum(diploid) 3	3.792
	CNS0095595	Whole white alabastrum(diploid) 2	4.131
	CNS0095596	Whole white alabastrum(diploid) 3	2.356
	CNS0095597	Whole white alabastrum(diploid) 4	4.909
	CNS0095598	Silvery flower (diploied) 1	4.785
	CNS0095599	Silvery flower (diploied) 2	2.330
	CNS0095600	Silvery flower (diploied) 3	2.467
	CNS0095601	Golden flower (diploid) 1	3.953
	CNS0095602	Golden flower (diploid) 2	5.893
	CNS0095603	Golden flower (diploid) 3	4.437
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.952
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.389
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.491
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.722
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.690
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.923
	CNS0095610	Silvery flower (tetraploid) 1	1.772
	CNS0095611	Silvery flower (tetraploid) 2	2.701
	CNS0095612	Silvery flower (tetraploid) 3	1.413
	CNS0095613	Golden flower (tetraploid) 1	0.349
	CNS0095614	Golden flower (tetraploid) 2	2.002
	CNS0095615	Golden flower (tetraploid) 3	0.386
CRA001975	CRR073297	Stem 1	6.133
	CRR073298	Stem 2	6.152
	CRR073299	Stem 3	6.943
	CRR073300	Leaf 1	9.190
	CRR073301	Leaf 2	7.219
	CRR073302	Leaf 3	4.137
	CRR073303	Juvenile bud 1	5.801
	CRR073304	Juvenile bud 2	5.493
	CRR073305	Juvenile bud 3	11.291
	CRR073306	Third green 1	1.199
	CRR073307	Third green 2	0.559
	CRR073308	Third green 3	1.032
	CRR073309	Second white 1	0.149
	CRR073310	Second white 2	0.360
	CRR073311	Second white 3	0.382
	CRR073312	Silver flowering 1	0.305
	CRR073313	Silver flowering 2	0.412
	CRR073314	Silver flowering 3	0.175
	CRR073315	Gold flowering 1	4.998
	CRR073316	Gold flowering 2	9.783
	CRR073317	Gold flowering 3	7.761
	CRR073318	Tawny withering 1	11.492
	CRR073319	Tawny withering 2	8.887
	CRR073320	Tawny withering 3	13.253