Gene detail

Detail information of GWHGAAZE024569

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008389408.1	7.9292E-106	PREDICTED: DNA replication licensing factor MCM5-like, partial [Malus domestica]
COG	YP_008432137.1	1E-67	Minichromosome maintenance protein MCM
Swissprot	tr\|O80786\|MCM5_ARATH	2E-102	DNA replication licensing factor MCM5
trEMBL	tr\|A0A097PJU6\|A0A097PJU6_ARTAN	7E-105	Minichromosome maintenance 5 protein {ECO:0000313\|EMBL:AIU48300.1} (Fragment)
TAIR10	AT2G07690.1	1E-87	Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45302842	45308667	+
GWHAAZE00000007	mRNA	45302842	45308667	+
GWHAAZE00000007	exon	45302842	45302985	+
GWHAAZE00000007	exon	45303092	45303271	+
GWHAAZE00000007	exon	45303357	45303455	+
GWHAAZE00000007	exon	45306874	45306951	+
GWHAAZE00000007	exon	45307243	45307347	+
GWHAAZE00000007	exon	45307502	45307593	+
GWHAAZE00000007	exon	45308219	45308351	+
GWHAAZE00000007	exon	45308460	45308555	+
GWHAAZE00000007	exon	45308638	45308667	+
GWHAAZE00000007	CDS	45302842	45302985	+
GWHAAZE00000007	CDS	45303092	45303271	+
GWHAAZE00000007	CDS	45303357	45303455	+
GWHAAZE00000007	CDS	45306874	45306951	+
GWHAAZE00000007	CDS	45307243	45307347	+
GWHAAZE00000007	CDS	45307502	45307593	+
GWHAAZE00000007	CDS	45308219	45308351	+
GWHAAZE00000007	CDS	45308460	45308555	+
GWHAAZE00000007	CDS	45308638	45308667	+

Transcript Sequence
>GWHTAAZE024603 TTTGAAACCGCAGCAGCGGAAGTTCTAGCGAGTTTAAGGTCAAGGGTGGCCGGAGAGACCGGGGAAATGGAAGAGCCAGAGACAGGAGAACTGCAGATTTTGTTGACATCCGAGGAAGATCCGGTGTCAATGCGATCACTGGGGGCACAATACATATCGAAATTCGTTAAGATATCTGGGATCACTATTGCTGCATCAAGGACCAAGGCCAAAGCTACTTATGTGACTTTGTTGTGTAAAAATTGTAAAAATGTGAAGGTTGTTCCTTGTCGTCCAGGGCTTGGTGGGGCAATTGTGCCGCGTTCATGTTACCATGTGGCTCAGGTAGGGGAAGAATCATGTCCGTTAGATCCGTGGATTGTGGTTCCAGATAAAAGCAAGTATGTTGATCAGCAGACCCTGAAATTGCAAGAAAATCCTGAGATTTTGCCAGATGGTGTGAAGTTAAGAGCTGATATCAATGTGTTGCTCTTGGGAGATCCATCCACTGCTAAATCACAGTTTCTTAAGTTTGTCGAGAAGACAGCTCCAGTAGCTGTATATACTTCTGGAAAAGGCTCATCAGCTGCTGGTCTTACTGCTTCAGTTATTCGAGACAGCAGTTCTCGGGAATTCTATCTGGAAGGAGGGGCCATGGTTTTGGCAGATGGAGGAGTTGTCTGCATTGATGAATTTGACAAGATGAGGCCAGAAGACAGAGTTGCAATTCACAAAGCCATGGAACAACAAACCATATCCATTGCCAAAGCGGGAATAACAACCGTTCTCAATTCTAGAACCTCTGTACTCGCAGCAGCTAACCCTCCATCAGGACGTTATGACGATCTTAAGACTGCTCAGGATAACATTGACTTGCAAACAACAATTCTTTCGAGATTCGATCTAATATTCATTGTGAAAGATAACAGGGAGTTAAGTCGAGGCATGAAGTTGGAAATGGTTACATTTAACGTGTAG

Network for GWHGAAZE024569

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17207.4	MCM_OB	44	147	1.80E-20
PF00493.24	MCM	142	308	8.80E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02209	MCM5, CDC46	DNA replication	map03030
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	biological_process	DNA replication initiation
GO:0006260	biological_process	DNA replication
GO:0005634	cellular_component	nucleus
GO:0042555	cellular_component	MCM complex
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding
GO:0003688	molecular_function	DNA replication origin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.148
	SRR3591706	second leaf	0.373
	SRR3591707	mature leaf	0.043
	SRR3591708	Shoot apex	0.586
	SRR3591709	Stem	0.801
	SRR3591710	White floral bud	0.075
	SRR3591711	White flower	0.158
	SRR3591712	Green floral bud	0.336
	SRR3591713	Yellow flower	0.176
SRP173429	SRR8316895	Juvenile bud stage	0.498
	SRR8316896	Juvenile bud stage	0.354
	SRR8316897	Juvenile bud stage	0.446
	SRR8316894	Third green stage	0.073
	SRR8316900	Third green stage	0.237
	SRR8316901	Third green stage	0.138
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.080
	SRR8316903	Complete white stage	0.039
	SRR8316902	Silver flowering stage	0.019
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.114
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.114
	SRR6706287	Light intensity 50%	0.064
	SRR6706288	Light intensity 20%	0.053
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.243
	CNS0095593	Slightly white alabastrum(diploid) 2	0.109
	CNS0095594	Slightly white alabastrum(diploid) 3	0.299
	CNS0095595	Whole white alabastrum(diploid) 2	0.263
	CNS0095596	Whole white alabastrum(diploid) 3	0.066
	CNS0095597	Whole white alabastrum(diploid) 4	0.034
	CNS0095598	Silvery flower (diploied) 1	0.153
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.150
	CNS0095601	Golden flower (diploid) 1	0.034
	CNS0095602	Golden flower (diploid) 2	0.136
	CNS0095603	Golden flower (diploid) 3	0.105
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.210
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.107
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.022
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.278
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.150
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.035
CRA001975	CRR073297	Stem 1	1.480
	CRR073298	Stem 2	0.085
	CRR073299	Stem 3	0.265
	CRR073300	Leaf 1	0.154
	CRR073301	Leaf 2	0.286
	CRR073302	Leaf 3	0.225
	CRR073303	Juvenile bud 1	0.308
	CRR073304	Juvenile bud 2	0.027
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.083
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.123
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.191
	CRR073316	Gold flowering 2	0.027
	CRR073317	Gold flowering 3	0.069
	CRR073318	Tawny withering 1	0.070
	CRR073319	Tawny withering 2	0.088
	CRR073320	Tawny withering 3	1.099