Gene detail

Detail information of GWHGAAZE024553

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267199.1	0	PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component [Vitis vinifera]
COG	YP_001540760.1	4E-102	elongation factor EF-2
Swissprot	tr\|O23755\|EF2_BETVU	0	Elongation factor 2
trEMBL	tr\|A5BRS2\|A5BRS2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81413.1}
TAIR10	AT1G06220.2	0	Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45032761	45042619	-
GWHAAZE00000007	mRNA	45032761	45042619	-
GWHAAZE00000007	exon	45032761	45033186	-
GWHAAZE00000007	exon	45034980	45035186	-
GWHAAZE00000007	exon	45035395	45035505	-
GWHAAZE00000007	exon	45035966	45036164	-
GWHAAZE00000007	exon	45036241	45036326	-
GWHAAZE00000007	exon	45037430	45037588	-
GWHAAZE00000007	exon	45037668	45037766	-
GWHAAZE00000007	exon	45038554	45039747	-
GWHAAZE00000007	exon	45040281	45040349	-
GWHAAZE00000007	exon	45041882	45042619	-
GWHAAZE00000007	CDS	45041882	45042619	-
GWHAAZE00000007	CDS	45040281	45040349	-
GWHAAZE00000007	CDS	45038554	45039747	-
GWHAAZE00000007	CDS	45037668	45037766	-
GWHAAZE00000007	CDS	45037430	45037588	-
GWHAAZE00000007	CDS	45036241	45036326	-
GWHAAZE00000007	CDS	45035966	45036164	-
GWHAAZE00000007	CDS	45035395	45035505	-
GWHAAZE00000007	CDS	45034980	45035186	-
GWHAAZE00000007	CDS	45033088	45033186	-
GWHAAZE00000007	three_prime_UTR	45032761	45033087	-

Transcript Sequence
>GWHTAAZE024587 ATGGACGAAAGCTTGTACGACGAATTTGGTAACTACATAGGCCCCGAAATCGAATCCGATCAAGACAGTGATATCGAAGACGAAGATGAACAACTCCCCGACAAATCCCCCTCCGATGAAGATGAAGAAGAAAATGCCGCCGGAGGATCAAACGGCTGGATAACCACCGGCACCGACGTCGAAATAGACAACCAAATCGTCCTCGCCGAGGACAAAAAATACTATCCAACGGCCGAGGAAGTCTACGGCGAAGAAGTGGAAACCCTAGTTATGGACGAAGACGAACTACCACTCGAACAACCTATAATTAAACCAATTAGGAATGTAAAATTTGAATTAGGTGTTAAGGATTCGTCTACTTATGTTTCGACGGAGTTTTTGTTAGGGCTAAGTTCGAACCCTAGCTTGGTGAGAAATGTGGCTTTGGTGGGGCATATACAGCACGGGAAGACAGTGTTTATGGATATGTTGGTGGAGCAGACTCATAGGATATCGACGTTTGATGAGAATAGTGAGAAGCATATGCGCTATGCGGACACTAGGGTTGACGAGCAGGAGAGGAGGATTTCAATTAAGGCTGTGCCTATGTCTCTGGTGCTCGAGGATAGTAATTCAAAGTCGTATTTGTGTAATGTGATGGATACGCCTGGGCATGTTAATTTCTCGGATGAGATGACTGCTGCTCTTAGGCTTGCTGATGGTGCTGTGCTGGTTGTTGATGCTGCTGAAGGTGTTATGGCAAATACAGAGAGGGCGATACGACATGCAATCCAAGACCGCCTTGCTATTGTAGTTGTCATAAACAAGGTTGACAGGTTGATAACTGAATTAAAATTGCCACCGAAGGATGCTTACCATAAGCTAAGGCATACAATTGAAGTCATAAATAACCACATAACCGCAGCTTCTTCTACTGCTGGAGATGTCCAGATTGTGGACCCCGCAATTGGAAATGTTTGTTTTGCTAGCGGCAGTGCAGGATGGTGCTTCACCCTTCACTCATTTGCTAAACTCTATGTCAAACTCCACGGTATCCCATTCGATGCTAATAAATTTGCAACCCGGCTTTGGGGAGATCACTATTTTGACCCTGATACTAGGGCTTTTAAAAAGAAACAACCGGCAAGTGGAGCGGATAGATCATTCGTCCAGTTTGTGCTCGAACCTCTTTACAAAATATACAGCCAAGTAATTGGAGAACATAAGAAGAGCGTTGAGACAACTCTTGCTGAACTCGGTGTCACTCTCCCAAACGCGGCTTATAAATTAAATGTCAGGCCTTTGCTGAGGTTGGCTTGTAGCTCGGTTTTCGGTTCAGCCACTGGCTTTACCGACATGCTGGTTCATCACATTCCCTCGGCCAAAGATGCTGCTTCTAAGAAGGTTGAACACGTTTATACTGGGCCTAAAGATTCCACTATTTATAAAGCTATGGAAGAATGTGACCCATCTGGACCTTTGATGGTTAATGTGACCAAATTGTACCCTAAATCCGATTGTAGTGTTTTTGACGCGTTTGGTAGGGTTTATAGCGGTGAACTCCAAACGGGTCAGACCGTTCGTGTTTTGGGAGAAGGCTATTCGCCTGATGATGAAGAGGATATGACTGTAAAAGAAGTTACGAAGTTGTGGGTTTATCAAGCTCGTTATAGGATACCCATAAGCAAGGCTCCACCAGGTTCTTGGGTTTTAATCGAAGGAGTTGATGCTTCGATTATGAAAACAGCAACCCTTTGTAGTGCGAATTATGATGAAGATGTTTATATATTCAGGCCTCTTCAGTTCAATACGCTTCCAGTTGTGAAAACGGCCACTGAGCCGTTGAATCCAAGCGAGTTGCCGAAAATGGTGGAGGGTCTTAGGAAGATCAGCAAGAGCTATCCTTTAGCAATTACAAAGGTTGAGGAGTCTGGGGAGCACACTATTTTAGGGACCGGAGAGTTGTACTTAGATTCTATAATGAAGGATCTTAGGGAGCTTTATTCAGAAGTGGAAGTCAAGGTGGCAGATCCTGTTGTCTCATTCTGTGAAACAGTGGTGGAGTCTTCATCGATGAAATGTTTTGCTGAAACACCCAACAAGAGAAATAAGATTACTATGATTGCCGAACCATTGGAGAGAGGACTTGCTGAGGACATTGAGAATGGTGTTGTAAGCATTGATTGGCCTCGAAAGAAGCTAGGGGACTTTTTCCAAACAAAATATGACTGGGATCTACTTGCTGCTCGATCTATTTGGGCTTTTGGGCCTGATAAACAGGGACCAAACATTCTATTAGACGACACGCTCTCAAGTGAAGTTGACAAAAGCTTATTGAATGCTGTTAAAGATTCAATTGTTCAAGGATTTCAGTGGGGTGCTCGAGAAGGACCCCTCTGTGATGAGCCCATCAGAAATGTCAAGTTCAAGATAGTTGATGCAAAGATTGCACCCGAGCCATTGCACCGTGGGACCGGTCAGATAATTCCAACTGCTCGACGTGTGGCTTATTCTGCTTTCCTCATGGCCACCCCAAGGCTTATGGAACCAGTATATTATGTGGAGATACAAACACCAATAGACTGTGTTTCTGCCATCTACACAGTGTTATCTCGAAGACGTGGACATGTTACCGCTGACGTTCCTCAACCCGGGACGCCAGCTTATATTGTCAAGGCATTTTTACCTGTTATCGAATCTTTTGGTTTCGAGACGGACTTGAGGTATCACACACAAGGGCAAGCATTTTGCCTCTCGGTATTTGACCATTGGGCTATTGTTCCTGGGGATCCTCTTGACAAGAGCATAGTCCTACGCCCACTTGAGCCTGCACCAATTCAGCATTTGGCTCGCGAGTTCATGGTCAAGACTAGACGCAGAAAGGGAATGAGTGAAGATGTGAGCATCAACAAGTTTTTTGACGAGGCTATGGTGGTAGAGCTAGCCCAACAGGCGGCTGATCTTCATCAACAAATGATATAATATGATGCTATAGATATAGCTGAGTTGCTGTTAGAAGAACTGTTTATTTGTAGTCTTTGTTACCATTTATGTAGATGACAAGTTTTTGTACCAAAACATGAGAATAGTGATATTTTTGGGTATCTGTTTCGATTCTTGTAAAAGAGTGGTTTTAAGAACTCTATCAAAGGCAGAGTTGAATGTTAGCTAAAGGCGATATTGGATAGGGCGATGTTACTTTTGCCAGAGTAAAATATTGCTTGTGTGGTTCATTGTGCTAAAAAGATAATGCATTGTTTCGATGATAGACCCTTTTTCCAAATTTTAGATTGAATCGTTAACATGTTA

Network for GWHGAAZE024553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16004.6	EFTUD2	4	117	6.60E-33
PF00009.28	GTP_EFTU	137	403	6.70E-50
PF03144.26	GTP_EFTU_D2	505	579	3.00E-11
PF03764.19	EFG_IV	720	836	1.80E-23
PF00679.25	EFG_C	839	927	6.10E-23

Protein Sequence

>GWHPAAZE024571
MDESLYDEFGNYIGPEIESDQDSDIEDEDEQLPDKSPSDEDEEENAAGGSNGWITTGTDVEIDNQIVLAEDKKYYPTAEEVYGEEVETLVMDEDELPLEQPIIKPIRNVKFELGVKDSSTYVSTEFLLGLSSNPSLVRNVALVGHIQHGKTVFMDMLVEQTHRISTFDENSEKHMRYADTRVDEQERRISIKAVPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTAALRLADGAVLVVDAAEGVMANTERAIRHAIQDRLAIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNHITAASSTAGDVQIVDPAIGNVCFASGSAGWCFTLHSFAKLYVKLHGIPFDANKFATRLWGDHYFDPDTRAFKKKQPASGADRSFVQFVLEPLYKIYSQVIGEHKKSVETTLAELGVTLPNAAYKLNVRPLLRLACSSVFGSATGFTDMLVHHIPSAKDAASKKVEHVYTGPKDSTIYKAMEECDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGELQTGQTVRVLGEGYSPDDEEDMTVKEVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCSANYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKRNKITMIAEPLERGLAEDIENGVVSIDWPRKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLHRGTGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMVVELAQQAADLHQQMI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12852	EFTUD2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.439
	SRR3591706	second leaf	15.181
	SRR3591707	mature leaf	11.375
	SRR3591708	Shoot apex	25.770
	SRR3591709	Stem	14.220
	SRR3591710	White floral bud	18.386
	SRR3591711	White flower	24.152
	SRR3591712	Green floral bud	21.687
	SRR3591713	Yellow flower	18.691
SRP173429	SRR8316895	Juvenile bud stage	14.771
	SRR8316896	Juvenile bud stage	19.573
	SRR8316897	Juvenile bud stage	10.494
	SRR8316894	Third green stage	8.789
	SRR8316900	Third green stage	21.530
	SRR8316901	Third green stage	20.437
	SRR8316898	Complete white stage	6.934
	SRR8316899	Complete white stage	23.053
	SRR8316903	Complete white stage	12.618
	SRR8316902	Silver flowering stage	8.766
	SRR8316904	Silver flowering stage	12.507
	SRR8316905	Silver flowering stage	4.898
	SRR8316906	Gold flowering stage	17.560
	SRR8316907	Gold flowering stage	15.699
	SRR8316908	Gold flowering stage	19.762
SRP132670	SRR6706286	Control	23.600
	SRR6706287	Light intensity 50%	23.625
	SRR6706288	Light intensity 20%	25.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.463
	CNS0095593	Slightly white alabastrum(diploid) 2	13.638
	CNS0095594	Slightly white alabastrum(diploid) 3	11.164
	CNS0095595	Whole white alabastrum(diploid) 2	11.971
	CNS0095596	Whole white alabastrum(diploid) 3	9.113
	CNS0095597	Whole white alabastrum(diploid) 4	9.293
	CNS0095598	Silvery flower (diploied) 1	15.772
	CNS0095599	Silvery flower (diploied) 2	14.075
	CNS0095600	Silvery flower (diploied) 3	22.748
	CNS0095601	Golden flower (diploid) 1	12.071
	CNS0095602	Golden flower (diploid) 2	21.850
	CNS0095603	Golden flower (diploid) 3	20.242
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.763
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.752
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.149
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.230
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.034
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.721
	CNS0095610	Silvery flower (tetraploid) 1	22.353
	CNS0095611	Silvery flower (tetraploid) 2	23.131
	CNS0095612	Silvery flower (tetraploid) 3	17.298
	CNS0095613	Golden flower (tetraploid) 1	9.501
	CNS0095614	Golden flower (tetraploid) 2	17.592
	CNS0095615	Golden flower (tetraploid) 3	15.127
CRA001975	CRR073297	Stem 1	25.545
	CRR073298	Stem 2	22.941
	CRR073299	Stem 3	23.507
	CRR073300	Leaf 1	23.998
	CRR073301	Leaf 2	24.472
	CRR073302	Leaf 3	20.784
	CRR073303	Juvenile bud 1	22.107
	CRR073304	Juvenile bud 2	15.019
	CRR073305	Juvenile bud 3	29.331
	CRR073306	Third green 1	7.683
	CRR073307	Third green 2	5.789
	CRR073308	Third green 3	9.500
	CRR073309	Second white 1	10.195
	CRR073310	Second white 2	12.770
	CRR073311	Second white 3	12.508
	CRR073312	Silver flowering 1	10.757
	CRR073313	Silver flowering 2	12.758
	CRR073314	Silver flowering 3	11.562
	CRR073315	Gold flowering 1	9.192
	CRR073316	Gold flowering 2	17.377
	CRR073317	Gold flowering 3	8.963
	CRR073318	Tawny withering 1	20.521
	CRR073319	Tawny withering 2	15.775
	CRR073320	Tawny withering 3	19.353