Gene detail

Detail information of GWHGAAZE024543

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267199.1	0	PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component [Vitis vinifera]
COG	YP_003815827.1	2E-33	Elongation factor 2
Swissprot	tr\|O23755\|EF2_BETVU	3E-73	Elongation factor 2
trEMBL	tr\|A5BRS2\|A5BRS2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81413.1}
TAIR10	AT1G06220.2	0	Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	44781595	44785247	-
GWHAAZE00000007	mRNA	44781595	44785247	-
GWHAAZE00000007	exon	44784510	44785247	-
GWHAAZE00000007	exon	44782911	44782979	-
GWHAAZE00000007	exon	44781595	44782272	-
GWHAAZE00000007	CDS	44784510	44785247	-
GWHAAZE00000007	CDS	44782911	44782979	-
GWHAAZE00000007	CDS	44781595	44782272	-

Transcript Sequence
>GWHTAAZE024577 ATGGACGAAAGCTTGTACGACGAATTTGGTAACTACATAGGCCCCGAAATCGAATCCGATCAAGACAGTGATATCGAAGACGAAGATGAACAACTCCCCGACAAATCCCCCTCCGATGAAGATGAAGAAGAAAATGCCGCCGGCGGATCAAACGGCTGGATAACCACCGGCACCGACGTCGAAATAGACAACCAAATCGTCCTCGCCGAGGACAAAAAATACTATCCAACGGCCGAGGAAGTCTACGGCGAAGAAGTGGAAACCCTAGTTATGGACGAAGACGAACTACCACTCGAACAACCTATAATTAAACCAATTAGGAATGTAAAATTTGAATTAGGTGTTAAGGATTCGTCTACTTATGTTTCGACGGAGTTTTTGTTAGGGCTAAGTTCGAACCCTAGCTTGGTGAGAAATGTGGCTTTGGTGGGGCATATACAGCACGGGAAGACAGTGTTTATGGATATGTTGGTGGAGCAGACTCATAGGATATCGACGTTTGATGAGAATAGTGAGAAGCATATGCGCTACGCGGACACTAGGGTTGACGAGCAGGAGAGGAGGATTTCAATTAAGGCTGTGCCTATGTCTCTGGTGCTCGAGGATAGTAATTCAAAGTCGTATTTGTGTAATGTGATGGATACGCCTGGGCATGTTAATTTCTCGGATGAGATGACTGCTGCTCTTAGGCTTGCTGATGGTGCTGTGCTGGTTGTTGATGCTGCTGAAGGTGTTATGGCAAATACAGAGAGGGCGATACGACATGCAATCCAAGACCGCCTTGCTATTGTAGTTGTCATAAACAAGCTTCTTCTACTGCTGGAGATGTCCAGATTGTGGACCCCAATTGGAAATGTTTGTTTTGCTAGCGGCAGTGCAGGATGGTGCTTCACCCTTCACTCATTTGCTAAACTCTATGTCAAACTCCACGGTATCCCATTCGATGCTAATAAATTTGCAACCCGGCTTTGGGGAGATCACTATTTTGACCCTGATACTAGGGCTTTTAAAAAGAAACAACCGGCAAGTGGAGCGGATAGATCATTCGTCCAGTTTGTGCTCGAACCTCTTTACAAAATATACAGCCAAGTAATTGGAGAACATAAGAAGAGCGTTGAGACAACTCTTGCTGAACTTCGGTGTCACTCTCCCAAGCGCGCTTATAAATTAAATGTCAGGCCTTTGCTGAGGTTGGCTTGTAGCTCGGTTTTCGGTTCAGCCACTGGCTTTACCGACATGCTGGTTCATCACATTCCCTCGGCCAAAGATGCTGCTTCTAAGAAGGTTGAACACGTTTATACTGGGCCTAAAGATTCCACTATTTATAAAGCTATGGAAGAATGTGACCCATCTGGACCATTGATGGTTAATGTGACCAAATTGTACCCTAAATCCGATTGTAGTGTTTTTGACGCGTTTGGTAGGGTTTATAGCGGTGAACTCCAAACGGGTCAGACCGTTCGTGTTTTGGGAGAAGGCTATTAG

Network for GWHGAAZE024543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16004.6	EFTUD2	4	117	2.30E-33
PF00009.28	GTP_EFTU	137	270	5.40E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12852	EFTUD2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.431
	SRR3591706	second leaf	7.760
	SRR3591707	mature leaf	5.293
	SRR3591708	Shoot apex	10.301
	SRR3591709	Stem	6.889
	SRR3591710	White floral bud	9.038
	SRR3591711	White flower	10.937
	SRR3591712	Green floral bud	8.974
	SRR3591713	Yellow flower	8.257
SRP173429	SRR8316895	Juvenile bud stage	8.689
	SRR8316896	Juvenile bud stage	9.631
	SRR8316897	Juvenile bud stage	3.743
	SRR8316894	Third green stage	4.235
	SRR8316900	Third green stage	12.587
	SRR8316901	Third green stage	10.352
	SRR8316898	Complete white stage	3.623
	SRR8316899	Complete white stage	13.293
	SRR8316903	Complete white stage	7.662
	SRR8316902	Silver flowering stage	4.500
	SRR8316904	Silver flowering stage	7.770
	SRR8316905	Silver flowering stage	3.660
	SRR8316906	Gold flowering stage	10.185
	SRR8316907	Gold flowering stage	8.389
	SRR8316908	Gold flowering stage	8.467
SRP132670	SRR6706286	Control	15.806
	SRR6706287	Light intensity 50%	16.465
	SRR6706288	Light intensity 20%	17.041
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.659
	CNS0095593	Slightly white alabastrum(diploid) 2	2.329
	CNS0095594	Slightly white alabastrum(diploid) 3	3.350
	CNS0095595	Whole white alabastrum(diploid) 2	3.227
	CNS0095596	Whole white alabastrum(diploid) 3	2.847
	CNS0095597	Whole white alabastrum(diploid) 4	2.613
	CNS0095598	Silvery flower (diploied) 1	7.469
	CNS0095599	Silvery flower (diploied) 2	6.745
	CNS0095600	Silvery flower (diploied) 3	14.038
	CNS0095601	Golden flower (diploid) 1	3.423
	CNS0095602	Golden flower (diploid) 2	14.137
	CNS0095603	Golden flower (diploid) 3	12.762
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.213
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.186
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.450
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.507
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.162
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.542
	CNS0095610	Silvery flower (tetraploid) 1	13.218
	CNS0095611	Silvery flower (tetraploid) 2	12.508
	CNS0095612	Silvery flower (tetraploid) 3	7.770
	CNS0095613	Golden flower (tetraploid) 1	3.336
	CNS0095614	Golden flower (tetraploid) 2	9.286
	CNS0095615	Golden flower (tetraploid) 3	8.923
CRA001975	CRR073297	Stem 1	15.943
	CRR073298	Stem 2	13.198
	CRR073299	Stem 3	15.760
	CRR073300	Leaf 1	14.043
	CRR073301	Leaf 2	12.799
	CRR073302	Leaf 3	10.648
	CRR073303	Juvenile bud 1	11.356
	CRR073304	Juvenile bud 2	7.705
	CRR073305	Juvenile bud 3	14.103
	CRR073306	Third green 1	4.493
	CRR073307	Third green 2	3.097
	CRR073308	Third green 3	5.594
	CRR073309	Second white 1	3.544
	CRR073310	Second white 2	5.793
	CRR073311	Second white 3	7.599
	CRR073312	Silver flowering 1	4.974
	CRR073313	Silver flowering 2	7.405
	CRR073314	Silver flowering 3	6.315
	CRR073315	Gold flowering 1	3.728
	CRR073316	Gold flowering 2	10.292
	CRR073317	Gold flowering 3	4.860
	CRR073318	Tawny withering 1	6.248
	CRR073319	Tawny withering 2	4.275
	CRR073320	Tawny withering 3	4.489