Detail information of GWHGAAZE024542


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011089261.10PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Sesamum indicum]
COGYP_007175577.13E-42translation elongation factor aEF-2
Swissprottr|O23755|EF2_BETVU7E-75Elongation factor 2
trEMBLtr|A5BRS2|A5BRS2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN81413.1}
TAIR10AT1G06220.20Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4477540144781333-
GWHAAZE00000007mRNA4477540144781333-
GWHAAZE00000007exon4478117844781333-
GWHAAZE00000007exon4478029244780390-
GWHAAZE00000007exon4478005444780212-
GWHAAZE00000007exon4477885944778944-
GWHAAZE00000007exon4477858444778782-
GWHAAZE00000007exon4477759844777804-
GWHAAZE00000007exon4477540144775828-
GWHAAZE00000007CDS4478117844781333-
GWHAAZE00000007CDS4478029244780390-
GWHAAZE00000007CDS4478005444780212-
GWHAAZE00000007CDS4477885944778944-
GWHAAZE00000007CDS4477858444778782-
GWHAAZE00000007CDS4477759844777804-
GWHAAZE00000007CDS4477573044775828-
GWHAAZE00000007three_prime_UTR4477540144775729-
Transcript Sequence

Network for GWHGAAZE024542

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03764.19EFG_IV1052212.70E-24
PF00679.25EFG_C2292752.50E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12852EFTUD2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.675
SRR3591706second leaf9.579
SRR3591707mature leaf7.007
SRR3591708Shoot apex22.309
SRR3591709Stem10.552
SRR3591710White floral bud13.345
SRR3591711White flower16.631
SRR3591712Green floral bud16.115
SRR3591713Yellow flower13.431
SRP173429 SRR8316895Juvenile bud stage 9.759
SRR8316896Juvenile bud stage 13.835
SRR8316897Juvenile bud stage 5.614
SRR8316894Third green stage 5.752
SRR8316900Third green stage 13.566
SRR8316901Third green stage 15.933
SRR8316898Complete white stage 4.230
SRR8316899Complete white stage 14.710
SRR8316903Complete white stage 6.781
SRR8316902Silver flowering stage5.323
SRR8316904Silver flowering stage6.725
SRR8316905Silver flowering stage3.189
SRR8316906Gold flowering stage 11.641
SRR8316907Gold flowering stage 13.934
SRR8316908Gold flowering stage 13.733
SRP132670SRR6706286Control9.515
SRR6706287Light intensity 50%8.756
SRR6706288Light intensity 20%10.883
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.049
CNS0095593Slightly white alabastrum(diploid) 215.078
CNS0095594Slightly white alabastrum(diploid) 313.578
CNS0095595Whole white alabastrum(diploid) 210.356
CNS0095596Whole white alabastrum(diploid) 39.999
CNS0095597Whole white alabastrum(diploid) 49.648
CNS0095598Silvery flower (diploied) 110.351
CNS0095599Silvery flower (diploied) 211.367
CNS0095600Silvery flower (diploied) 310.235
CNS0095601Golden flower (diploid) 111.865
CNS0095602Golden flower (diploid) 211.154
CNS0095603Golden flower (diploid) 310.945
CNS0095604Slightly white alabastrum(tetraploid) 116.661
CNS0095605Slightly white alabastrum(tetraploid) 214.597
CNS0095606Slightly white alabastrum(tetraploid) 326.480
CNS0095607Whole white alabastrum(tetraploid) 110.438
CNS0095608Whole white alabastrum(tetraploid) 211.792
CNS0095609Whole white alabastrum(tetraploid) 316.158
CNS0095610Silvery flower (tetraploid) 114.484
CNS0095611Silvery flower (tetraploid) 212.589
CNS0095612Silvery flower (tetraploid) 313.574
CNS0095613Golden flower (tetraploid) 110.415
CNS0095614Golden flower (tetraploid) 213.080
CNS0095615Golden flower (tetraploid) 39.050
CRA001975CRR073297Stem 113.830
CRR073298Stem 212.842
CRR073299Stem 314.075
CRR073300Leaf 113.089
CRR073301Leaf 212.351
CRR073302Leaf 311.691
CRR073303Juvenile bud 112.174
CRR073304Juvenile bud 28.489
CRR073305Juvenile bud 315.143
CRR073306Third green 13.920
CRR073307Third green 24.847
CRR073308Third green 34.575
CRR073309Second white 15.358
CRR073310Second white 27.656
CRR073311Second white 37.190
CRR073312Silver flowering 15.777
CRR073313Silver flowering 28.689
CRR073314Silver flowering 36.255
CRR073315Gold flowering 17.081
CRR073316Gold flowering 210.428
CRR073317Gold flowering 36.495
CRR073318Tawny withering 114.634
CRR073319Tawny withering 213.620
CRR073320Tawny withering 315.435