Gene detail

Detail information of GWHGAAZE024510

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10492.1	2.5607E-144	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GWH3\|OS9_ARATH	3E-92	Protein OS-9 homolog {ECO:0000305} (Precursor)
trEMBL	tr\|A0A068UQ93\|A0A068UQ93_COFCA	1E-144	Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313\|EMBL:CDP10492.1}
TAIR10	AT5G35080.1	7E-75	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43920771	43923680	+
GWHAAZE00000007	mRNA	43920771	43923680	+
GWHAAZE00000007	exon	43920771	43920974	+
GWHAAZE00000007	exon	43921557	43921628	+
GWHAAZE00000007	exon	43922393	43922508	+
GWHAAZE00000007	exon	43922646	43922712	+
GWHAAZE00000007	exon	43922812	43922918	+
GWHAAZE00000007	exon	43923260	43923680	+
GWHAAZE00000007	CDS	43920771	43920974	+
GWHAAZE00000007	CDS	43921557	43921628	+
GWHAAZE00000007	CDS	43922393	43922508	+
GWHAAZE00000007	CDS	43922646	43922712	+
GWHAAZE00000007	CDS	43922812	43922918	+
GWHAAZE00000007	CDS	43923260	43923434	+
GWHAAZE00000007	three_prime_UTR	43923435	43923680	+

Transcript Sequence
>GWHTAAZE024544 GACGATGATCAGGAATCTGTGGTTATGCCTAATAAAAACGGAGAGAAGTTTCTATGTTTCTTGCCTAAAGTTGAAAAGTCCAAGAATGAAAAGCCAGTCATACAACAGAACACAAGCAGCTTGATTGTGGGGACTGAGAAACGCATTAAACAGAAGACACCTGATGAGCTTCTTGAAGTCCTAAAGGACAGATGTTTTCTTCGACAAGAAGGGTGGTGGTCGTATGAGTTTTGTTATCAGCAGAGGTTGCGGCAAGTTCATTTGGAGGATGATAAGGTTGTTCAAGAGTTTGTCTTGGGTGTATATGATGCGGAGGCTACAGCTTCTTATAACCAGAACCTGTCTGACATTTCAACACTGAAAGATCCACGCTCAAAAGATGCCTCCCAAAGGTATCTGGCTCATCAATATACGAATGGAACCATGTGTGATCTCACAAATCAGCCTCGAGAAACTGAGGTGAGATTTGTTTGTTCGGAGCCCAGAGCTATGATTAGTTCTATTACTGAGTTATCAACATGCAAGTATGCACTCACCATCCAATGCCCAATGCTTTGCAAGCACCCGTTGTTCCAAGAAGAGAGGCCGGTATGGCATATCATTAACTGTAACGTGCTCCCGAAGGATTACACGGAGCCGAAAAGGGAGCAAGAAAGTTCACAGAATGAGAAGAAGATCACAATGGTGACTGACCTTGACAATCCTCCGTCTAATCTTGATTCTGAAGAATACGCAACATAAATGTTTGTGATCATGAAAGAAAAAAAGAAAAGAAAAATACAAGTTTCAGTGATATAGACTTACAGTGCCTGCAAAACGTAATCTGTATGGGCTTACTTTCTTACAAATTGATTATTTAGGTGGTTGTTAGTTGAGGTTAAAATACTTTTCTTGATTTTGTTGTCCATATTGACATTTCTTTACTAATATGTAATTTTTTGTAAGATATTAAAGGTGATTTGATTACATGTATGGTTGGATCTGAAA

Network for GWHGAAZE024510

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07915.14	PRKCSH	64	143	9.40E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10088	OS9	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.898
	SRR3591706	second leaf	26.897
	SRR3591707	mature leaf	28.972
	SRR3591708	Shoot apex	35.554
	SRR3591709	Stem	37.006
	SRR3591710	White floral bud	49.897
	SRR3591711	White flower	49.596
	SRR3591712	Green floral bud	41.032
	SRR3591713	Yellow flower	64.454
SRP173429	SRR8316895	Juvenile bud stage	18.827
	SRR8316896	Juvenile bud stage	27.359
	SRR8316897	Juvenile bud stage	17.113
	SRR8316894	Third green stage	10.831
	SRR8316900	Third green stage	37.538
	SRR8316901	Third green stage	37.876
	SRR8316898	Complete white stage	16.796
	SRR8316899	Complete white stage	49.445
	SRR8316903	Complete white stage	24.843
	SRR8316902	Silver flowering stage	19.057
	SRR8316904	Silver flowering stage	26.236
	SRR8316905	Silver flowering stage	11.789
	SRR8316906	Gold flowering stage	36.333
	SRR8316907	Gold flowering stage	38.122
	SRR8316908	Gold flowering stage	38.456
SRP132670	SRR6706286	Control	18.171
	SRR6706287	Light intensity 50%	20.586
	SRR6706288	Light intensity 20%	18.395
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.958
	CNS0095593	Slightly white alabastrum(diploid) 2	34.195
	CNS0095594	Slightly white alabastrum(diploid) 3	31.737
	CNS0095595	Whole white alabastrum(diploid) 2	28.479
	CNS0095596	Whole white alabastrum(diploid) 3	34.250
	CNS0095597	Whole white alabastrum(diploid) 4	31.561
	CNS0095598	Silvery flower (diploied) 1	32.539
	CNS0095599	Silvery flower (diploied) 2	24.948
	CNS0095600	Silvery flower (diploied) 3	41.558
	CNS0095601	Golden flower (diploid) 1	28.959
	CNS0095602	Golden flower (diploid) 2	45.744
	CNS0095603	Golden flower (diploid) 3	45.671
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.702
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.826
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.113
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.610
	CNS0095610	Silvery flower (tetraploid) 1	35.092
	CNS0095611	Silvery flower (tetraploid) 2	34.634
	CNS0095612	Silvery flower (tetraploid) 3	42.089
	CNS0095613	Golden flower (tetraploid) 1	31.509
	CNS0095614	Golden flower (tetraploid) 2	31.883
	CNS0095615	Golden flower (tetraploid) 3	35.011
CRA001975	CRR073297	Stem 1	33.278
	CRR073298	Stem 2	32.701
	CRR073299	Stem 3	32.489
	CRR073300	Leaf 1	37.702
	CRR073301	Leaf 2	32.656
	CRR073302	Leaf 3	36.805
	CRR073303	Juvenile bud 1	43.690
	CRR073304	Juvenile bud 2	36.841
	CRR073305	Juvenile bud 3	32.843
	CRR073306	Third green 1	18.892
	CRR073307	Third green 2	24.326
	CRR073308	Third green 3	21.984
	CRR073309	Second white 1	27.581
	CRR073310	Second white 2	33.565
	CRR073311	Second white 3	25.128
	CRR073312	Silver flowering 1	29.811
	CRR073313	Silver flowering 2	22.507
	CRR073314	Silver flowering 3	33.701
	CRR073315	Gold flowering 1	24.819
	CRR073316	Gold flowering 2	31.366
	CRR073317	Gold flowering 3	18.141
	CRR073318	Tawny withering 1	31.140
	CRR073319	Tawny withering 2	35.309
	CRR073320	Tawny withering 3	35.010