Gene detail

Detail information of GWHGAAZE024503

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006857908.1	2.4193E-166	hypothetical protein AMTR_s00069p00134710 [Amborella trichopoda]
COG	YP_005063728.1	7E-42	prephenate dehydrogenase
Swissprot	tr\|Q9LMR3\|TYRA2_ARATH	8E-155	Arogenate dehydrogenase 2, chloroplastic (Precursor)
trEMBL	tr\|U5DAW0\|U5DAW0_AMBTC	9E-167	Uncharacterized protein {ECO:0000313\|EMBL:ERN19375.1}
TAIR10	AT1G15710.1	3E-119	prephenate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43791671	43794117	+
GWHAAZE00000007	mRNA	43791671	43794117	+
GWHAAZE00000007	exon	43791671	43791904	+
GWHAAZE00000007	exon	43793482	43794117	+
GWHAAZE00000007	CDS	43791671	43791904	+
GWHAAZE00000007	CDS	43793482	43794117	+

Transcript Sequence
>GWHTAAZE024537 GCGGCCCAGCCCTTCGACTACGAGTCCAAAATCTCTGACCGCATCTCCAAATCCTCAAAACTTAAAATTGCCGTAATTGGATTCGGCAATTTCGGCCAGTTCATCACAAAAACCCTAGTTCGCCAAGGCCACGAGGTACTTGCTCACTCCCGATCGGATTATTCCCAATCCGCTTCGAATCTCGGAGTTCAGTTCTTCCGAGATCCTAACGATCTATGCGAAGAACATCCCGAGGTAATCCTCCTCTGTACTTCGATTATGTCCACAGAAAGAGTTCTTGGTTCATTGCCACTACAAAGATTGAAGAGAAGTACTCTATTTGTTGATGTATTGTCGGTTAAAGAGTTTCCCAGAAATTTGTTCACTCAATTATTACCCCGAGATTTCGATATTTTGTGTACTCATCCTATGTTTGGACCTGAGAGTGGAAAAGATAGTTGGAAGGGACTTCCATTTGTGTATGATAAAGTTAGAATTGGTAGTGAAGAAGCTAGGATTTCTAGATGTGAAAGATTCTTAGACATTTTCACTAATGAAGGTTGTAGAATGGTGGAAATGTCGTGTGCGGAACATGATAGGCATGCAGCCGAGTCTCAGTTTATTACTCATACAGTTGGTAGGGTTTTGGAGAAGCTAAATTTGGAGAAAACCCCGATTAATACTAAGGGGTACGAGACTTTGTTGGATTTGGTGGAAAATACGGGTAGCGATAGCTTTGAGTTGTACTATGGGTTGTTTTTGTACAACACGAATTCAATGGAGCAATTGGAGAGGTTGGATTTGGCGTTCGAGTCTTTGAAGAAAGAGTTGTTTGGTCATTTGCATGATGTTGTGAGGAAGCAGTTGTTTGAGAGTACCGAAAGTAATTGA

Network for GWHGAAZE024503

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02153.18	PDH	38	257	4.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15227	TYRAAT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0006571	biological_process	tyrosine biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0009507	cellular_component	chloroplast
GO:0004665	molecular_function	prephenate dehydrogenase (NADP+) activity
GO:0008977	molecular_function	prephenate dehydrogenase (NAD+) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.419
	SRR3591706	second leaf	12.774
	SRR3591707	mature leaf	8.141
	SRR3591708	Shoot apex	14.327
	SRR3591709	Stem	7.617
	SRR3591710	White floral bud	9.521
	SRR3591711	White flower	9.063
	SRR3591712	Green floral bud	18.026
	SRR3591713	Yellow flower	8.600
SRP173429	SRR8316895	Juvenile bud stage	11.651
	SRR8316896	Juvenile bud stage	11.979
	SRR8316897	Juvenile bud stage	13.026
	SRR8316894	Third green stage	4.724
	SRR8316900	Third green stage	14.993
	SRR8316901	Third green stage	14.354
	SRR8316898	Complete white stage	2.397
	SRR8316899	Complete white stage	12.137
	SRR8316903	Complete white stage	6.897
	SRR8316902	Silver flowering stage	2.731
	SRR8316904	Silver flowering stage	3.576
	SRR8316905	Silver flowering stage	2.568
	SRR8316906	Gold flowering stage	4.982
	SRR8316907	Gold flowering stage	4.417
	SRR8316908	Gold flowering stage	10.311
SRP132670	SRR6706286	Control	11.396
	SRR6706287	Light intensity 50%	11.943
	SRR6706288	Light intensity 20%	11.933
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.804
	CNS0095593	Slightly white alabastrum(diploid) 2	12.132
	CNS0095594	Slightly white alabastrum(diploid) 3	16.072
	CNS0095595	Whole white alabastrum(diploid) 2	10.781
	CNS0095596	Whole white alabastrum(diploid) 3	8.921
	CNS0095597	Whole white alabastrum(diploid) 4	10.121
	CNS0095598	Silvery flower (diploied) 1	7.681
	CNS0095599	Silvery flower (diploied) 2	11.339
	CNS0095600	Silvery flower (diploied) 3	8.097
	CNS0095601	Golden flower (diploid) 1	9.310
	CNS0095602	Golden flower (diploid) 2	11.088
	CNS0095603	Golden flower (diploid) 3	9.592
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.677
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.990
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.880
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.675
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.181
	CNS0095610	Silvery flower (tetraploid) 1	6.961
	CNS0095611	Silvery flower (tetraploid) 2	8.980
	CNS0095612	Silvery flower (tetraploid) 3	10.764
	CNS0095613	Golden flower (tetraploid) 1	5.268
	CNS0095614	Golden flower (tetraploid) 2	7.688
	CNS0095615	Golden flower (tetraploid) 3	6.518
CRA001975	CRR073297	Stem 1	10.227
	CRR073298	Stem 2	6.174
	CRR073299	Stem 3	4.202
	CRR073300	Leaf 1	8.250
	CRR073301	Leaf 2	6.474
	CRR073302	Leaf 3	6.761
	CRR073303	Juvenile bud 1	6.002
	CRR073304	Juvenile bud 2	5.152
	CRR073305	Juvenile bud 3	6.408
	CRR073306	Third green 1	2.270
	CRR073307	Third green 2	2.230
	CRR073308	Third green 3	2.086
	CRR073309	Second white 1	5.213
	CRR073310	Second white 2	4.032
	CRR073311	Second white 3	4.513
	CRR073312	Silver flowering 1	5.839
	CRR073313	Silver flowering 2	6.236
	CRR073314	Silver flowering 3	6.777
	CRR073315	Gold flowering 1	4.716
	CRR073316	Gold flowering 2	9.255
	CRR073317	Gold flowering 3	5.494
	CRR073318	Tawny withering 1	3.210
	CRR073319	Tawny withering 2	8.384
	CRR073320	Tawny withering 3	9.549