Detail information of GWHGAAZE024501


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011078532.10PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic [Sesamum indicum]
COGYP_005440390.15E-98monogalactosyldiacylglycerol synthase family protein
Swissprottr|Q9SI93|MGDG3_ARATH0Monogalactosyldiacylglycerol synthase 3, chloroplastic (Precursor)
trEMBLtr|A0A022R431|A0A022R431_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU34956.1}
TAIR10AT2G11810.10monogalactosyldiacylglycerol synthase type C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4375858943762192-
GWHAAZE00000007mRNA4375858943762192-
GWHAAZE00000007exon4375858943758762-
GWHAAZE00000007exon4375902843759102-
GWHAAZE00000007exon4375920243759264-
GWHAAZE00000007exon4375936843759592-
GWHAAZE00000007exon4375970243759843-
GWHAAZE00000007exon4376009943760260-
GWHAAZE00000007exon4376102343761195-
GWHAAZE00000007exon4376197143762192-
GWHAAZE00000007CDS4376197143762192-
GWHAAZE00000007CDS4376102343761195-
GWHAAZE00000007CDS4376009943760260-
GWHAAZE00000007CDS4375970243759843-
GWHAAZE00000007CDS4375936843759592-
GWHAAZE00000007CDS4375920243759264-
GWHAAZE00000007CDS4375902843759102-
GWHAAZE00000007CDS4375858943758762-
Transcript Sequence

Network for GWHGAAZE024501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06925.12MGDG_synth542226.60E-59
PF04101.17Glyco_tran_28_C2513766.30E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03715MGD Metabolic pathways map01100
Glycerolipid metabolismmap00561

Gene Ontology

GO term OntologyName
GO:0009247biological_processglycolipid biosynthetic process
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE024501.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055606570Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.227
SRR3591706second leaf3.896
SRR3591707mature leaf1.107
SRR3591708Shoot apex3.097
SRR3591709Stem13.196
SRR3591710White floral bud63.472
SRR3591711White flower11.649
SRR3591712Green floral bud15.732
SRR3591713Yellow flower18.003
SRP173429 SRR8316895Juvenile bud stage 2.907
SRR8316896Juvenile bud stage 4.957
SRR8316897Juvenile bud stage 1.172
SRR8316894Third green stage 1.710
SRR8316900Third green stage 10.199
SRR8316901Third green stage 8.914
SRR8316898Complete white stage 1.462
SRR8316899Complete white stage 6.879
SRR8316903Complete white stage 2.472
SRR8316902Silver flowering stage2.874
SRR8316904Silver flowering stage2.787
SRR8316905Silver flowering stage1.844
SRR8316906Gold flowering stage 3.873
SRR8316907Gold flowering stage 5.154
SRR8316908Gold flowering stage 1.858
SRP132670SRR6706286Control8.321
SRR6706287Light intensity 50%10.185
SRR6706288Light intensity 20%8.752
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.180
CNS0095593Slightly white alabastrum(diploid) 26.122
CNS0095594Slightly white alabastrum(diploid) 34.805
CNS0095595Whole white alabastrum(diploid) 210.064
CNS0095596Whole white alabastrum(diploid) 39.361
CNS0095597Whole white alabastrum(diploid) 416.019
CNS0095598Silvery flower (diploied) 13.910
CNS0095599Silvery flower (diploied) 27.118
CNS0095600Silvery flower (diploied) 35.012
CNS0095601Golden flower (diploid) 12.272
CNS0095602Golden flower (diploid) 23.661
CNS0095603Golden flower (diploid) 33.677
CNS0095604Slightly white alabastrum(tetraploid) 17.250
CNS0095605Slightly white alabastrum(tetraploid) 24.317
CNS0095606Slightly white alabastrum(tetraploid) 311.360
CNS0095607Whole white alabastrum(tetraploid) 116.302
CNS0095608Whole white alabastrum(tetraploid) 225.584
CNS0095609Whole white alabastrum(tetraploid) 311.559
CNS0095610Silvery flower (tetraploid) 13.620
CNS0095611Silvery flower (tetraploid) 25.433
CNS0095612Silvery flower (tetraploid) 311.648
CNS0095613Golden flower (tetraploid) 11.398
CNS0095614Golden flower (tetraploid) 22.001
CNS0095615Golden flower (tetraploid) 37.241
CRA001975CRR073297Stem 17.120
CRR073298Stem 25.441
CRR073299Stem 35.197
CRR073300Leaf 18.136
CRR073301Leaf 28.037
CRR073302Leaf 35.300
CRR073303Juvenile bud 113.863
CRR073304Juvenile bud 215.646
CRR073305Juvenile bud 311.170
CRR073306Third green 116.622
CRR073307Third green 221.682
CRR073308Third green 318.740
CRR073309Second white 113.036
CRR073310Second white 26.233
CRR073311Second white 37.474
CRR073312Silver flowering 116.111
CRR073313Silver flowering 218.273
CRR073314Silver flowering 311.246
CRR073315Gold flowering 114.310
CRR073316Gold flowering 23.969
CRR073317Gold flowering 39.212
CRR073318Tawny withering 111.884
CRR073319Tawny withering 211.978
CRR073320Tawny withering 311.681