Gene detail

Detail information of GWHGAAZE024499

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656516.1	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis vinifera]
COG	YP_006705230.1	0.00000002	Ubiquitin specific protease
Swissprot	tr\|Q9LEW0\|UBP22_ARATH	4E-150	Ubiquitin carboxyl-terminal hydrolase 22
trEMBL	tr\|M5VV68\|M5VV68_PRUPE	0	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT5G10790.1	1E-122	ubiquitin-specific protease 22

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43729354	43734601	-
GWHAAZE00000007	mRNA	43729354	43734601	-
GWHAAZE00000007	exon	43733769	43734601	-
GWHAAZE00000007	exon	43732867	43732991	-
GWHAAZE00000007	exon	43731169	43731254	-
GWHAAZE00000007	exon	43731034	43731079	-
GWHAAZE00000007	exon	43729354	43730132	-
GWHAAZE00000007	CDS	43733769	43734601	-
GWHAAZE00000007	CDS	43732867	43732991	-
GWHAAZE00000007	CDS	43731169	43731254	-
GWHAAZE00000007	CDS	43731034	43731079	-
GWHAAZE00000007	CDS	43729354	43730132	-

Transcript Sequence
>GWHTAAZE024533 ATGTCAAAGATGGATCAGTGCCCTCACTTGATTGACTTCCGATCCAAAAACGGATCCAGACCATTCAGGTTCCTCCACGACTGCCTCAAAGTTCGCCCCCTCGGCCGCGCCTCTATCCGACGAGACCCCAACGAGCTCGCCCGGTGCGCCGCCTGCTCCCACGCGCCTTCTCCTCTTCTCCTCCGCGGACACTCTCCTCCGCGGCTGTACGCGTGCGTGGCTTGCGCCTCCGTTTTCTGCCGCCTCCACGCGCCGTCTCACGCGCTGGATCTCGCAGGCCACGAGATCGCCGTCGACGTCGACCGGGCGGAGCTATTCTGCTGCGCCTGCCTCGACCAGGTCTACGACCGGGACTTCGACGCAGCCGTCGTGCTGGCGCAGACGGCGGCGGCAACCCTGGGAGGCACCACCGGATCGATTCCTTTTCCACAGCCGGAGAATCTCCGTAAGCGGCGGCGCGTGGATTACCGGCCGTGGTCACCTGATTTGAGAGAGAGTGTTTTAGTCGATAAAAATTCGAGTCCGCTAACAAGAAATGGAGATGATTCTTCTTCGGATTCGGAGTTACCTTTCGGATTGAAAGGTCTTAACAATCTCGGAAATTCGTGTTTTTTGAATTCGGTGTTGCAAGCTTTGCTTCACACTCCACCGTTGAGGAACTATTTTTTGAGTGATCGGCATAATCGCTACTTTTGTCAGCAGAATAGAGCTAAGAAGAATGAGGGCAATAACAAGAATTCGAGGCTGTGTTTGGCTTGTGATATGGATGCTATGTATTCTGCTGTTTTCTCTGGGGATCGGATTCCTTATAGTCCCGCGAAATTCTTATACAGTTGGTGGCAACATGCGGAGGACCTGGCTTGTTATGAACAGCAAGATGCACATGAATTTTTCATTTCAATGCTTGATGGGATTCATGAAAAGGTTGAGAAGGATAGACGGAGACCCCATAGCCAAGGTCTTCATTGCCCTAGGCGTCATCAACTTGTCTCAGATTTAGGGCTAATTCTCAACCTGCAAGCTTTGGCCATCTGCTTCACTCCACCACTTCTGTTTGATGGAGACATAGTTATGCAAAATCCTATAGTGGGCAGCGGAGATTGTTGTATTGCACACAGGGTATTCTCTGGCATCTTGCGATCAGACGTCATGTGCACGGCATGTGGCTTTACATCTACTACGTACGATCCATGTGTCGACATCTCATTGGACTTGGAACCGAACCAAGGGACCTCCACAAAGACGAATTCCACAAAACCCCACAATTCTCTCAATAGCGACGCGGGTCCCACAGGTTCAACCCAAAGCTGTGGAATATCGACCCTTATGGGGTGTTTGGACAGGTTCACAAGACCCGAGAGATTAGGCTCTGCCGCTGACCAAAAGTTCTTCTGCCAACAGTGTCAAATCAGACAAGAATCTCTCAAACAAATGTCCATAAGAAAGCTCCCTTTGGTTTCTTGCTTTCACATCAAAAGATTCGAACATTCTTCGCTCCGAAATATGTCAAAAAAGGTTGACCGTTATTTACAGTTCCCGTTTTCTTTGGACATGGCCCCATATCTCTCCTCGTCAATATTGAGGGGGCGATTTGGGAACAGAATTTTCAGCTTTGAAGGGGACGAGCCAGATGGGTCTGACGAATTGTCCTCGGAATTTGAGCTTTTTGCCGTTATTACTCACACGGGAAGGTTAGATGCGGGCCATTATGTGACGTATTTGAGGCTAAGTAATCAATGGTACAAATGTGATGATTCTTGGATTACTCGAGTTAATGAGGATATTGTTCGGGCTGCCCAAGGTTACATGCTGTTCTATGTGCAGAAGATGCTTTTTTACAAAACGAGTGAGAAACAAACCACTTCATGA

Network for GWHGAAZE024499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02148.20	zf-UBP	49	118	2.10E-06
PF00443.30	UCH	195	606	1.50E-52

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.418
	SRR3591706	second leaf	9.737
	SRR3591707	mature leaf	16.926
	SRR3591708	Shoot apex	15.436
	SRR3591709	Stem	31.019
	SRR3591710	White floral bud	20.032
	SRR3591711	White flower	19.704
	SRR3591712	Green floral bud	17.427
	SRR3591713	Yellow flower	14.047
SRP173429	SRR8316895	Juvenile bud stage	13.216
	SRR8316896	Juvenile bud stage	14.906
	SRR8316897	Juvenile bud stage	9.892
	SRR8316894	Third green stage	4.725
	SRR8316900	Third green stage	12.048
	SRR8316901	Third green stage	12.130
	SRR8316898	Complete white stage	4.565
	SRR8316899	Complete white stage	23.999
	SRR8316903	Complete white stage	10.668
	SRR8316902	Silver flowering stage	5.562
	SRR8316904	Silver flowering stage	6.579
	SRR8316905	Silver flowering stage	3.245
	SRR8316906	Gold flowering stage	9.885
	SRR8316907	Gold flowering stage	10.361
	SRR8316908	Gold flowering stage	11.907
SRP132670	SRR6706286	Control	10.211
	SRR6706287	Light intensity 50%	10.382
	SRR6706288	Light intensity 20%	10.623
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.345
	CNS0095593	Slightly white alabastrum(diploid) 2	13.323
	CNS0095594	Slightly white alabastrum(diploid) 3	14.585
	CNS0095595	Whole white alabastrum(diploid) 2	13.000
	CNS0095596	Whole white alabastrum(diploid) 3	6.480
	CNS0095597	Whole white alabastrum(diploid) 4	10.940
	CNS0095598	Silvery flower (diploied) 1	16.731
	CNS0095599	Silvery flower (diploied) 2	23.835
	CNS0095600	Silvery flower (diploied) 3	20.139
	CNS0095601	Golden flower (diploid) 1	21.104
	CNS0095602	Golden flower (diploid) 2	25.722
	CNS0095603	Golden flower (diploid) 3	26.425
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.586
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.557
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.220
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.551
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.261
	CNS0095610	Silvery flower (tetraploid) 1	11.864
	CNS0095611	Silvery flower (tetraploid) 2	13.585
	CNS0095612	Silvery flower (tetraploid) 3	13.362
	CNS0095613	Golden flower (tetraploid) 1	6.425
	CNS0095614	Golden flower (tetraploid) 2	12.100
	CNS0095615	Golden flower (tetraploid) 3	13.397
CRA001975	CRR073297	Stem 1	16.488
	CRR073298	Stem 2	12.749
	CRR073299	Stem 3	11.187
	CRR073300	Leaf 1	12.262
	CRR073301	Leaf 2	11.702
	CRR073302	Leaf 3	8.364
	CRR073303	Juvenile bud 1	10.109
	CRR073304	Juvenile bud 2	6.913
	CRR073305	Juvenile bud 3	13.041
	CRR073306	Third green 1	9.190
	CRR073307	Third green 2	7.041
	CRR073308	Third green 3	8.105
	CRR073309	Second white 1	5.427
	CRR073310	Second white 2	7.020
	CRR073311	Second white 3	8.475
	CRR073312	Silver flowering 1	6.687
	CRR073313	Silver flowering 2	6.117
	CRR073314	Silver flowering 3	8.396
	CRR073315	Gold flowering 1	5.337
	CRR073316	Gold flowering 2	12.964
	CRR073317	Gold flowering 3	7.654
	CRR073318	Tawny withering 1	20.115
	CRR073319	Tawny withering 2	40.188
	CRR073320	Tawny withering 3	17.839