Gene detail

Detail information of GWHGAAZE024495

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011078417.1	3.376E-121	PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Sesamum indicum]
COG	YP_003266597.1	0.00000002	serine/threonine protein kinase
Swissprot	tr\|Q9ASQ5\|CRCK3_ARATH	1E-78	Calmodulin-binding receptor-like cytoplasmic kinase 3 (Precursor)
trEMBL	tr\|A5ALW5\|A5ALW5_VITVI	2E-121	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN62615.1}
TAIR10	AT2G11520.1	3E-67	calmodulin-binding receptor-like cytoplasmic kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	43671849	43677424	+
GWHAAZE00000007	mRNA	43671849	43677424	+
GWHAAZE00000007	exon	43671849	43672089	+
GWHAAZE00000007	exon	43673065	43673318	+
GWHAAZE00000007	exon	43674342	43674507	+
GWHAAZE00000007	exon	43674584	43674693	+
GWHAAZE00000007	exon	43677215	43677424	+
GWHAAZE00000007	CDS	43671849	43672089	+
GWHAAZE00000007	CDS	43673065	43673318	+
GWHAAZE00000007	CDS	43674342	43674507	+
GWHAAZE00000007	CDS	43674584	43674693	+
GWHAAZE00000007	CDS	43677215	43677424	+

Transcript Sequence
>GWHTAAZE024529 GAGTTACCTTTGCAGGCTGGAAGGAAAGTTTTGCAAAACGTGGTTAGAAAGGATACGACGGGGAAGCAAAAAATTCAGACTAACCAAGCAAAAGATGATAAGAAATCTCCCTTAGCCCCCAAATATCTGGCCATGGCAGTGCCGGGAATTTTTGTTCTGTGTTGTGCTTTCCTTTGTCCGTGCTTTCAGTCAAGAAGGAAACAAGCCGCCCATACTGTTCTTTCAAAAGACCCTGTTTCAATGGATTCCTCCTTGGAAATGTCTGTTTCAGAAAAGACTCTAGCCAGTCCACTAAGAGTGCCGCCTAGTCCTTCGAGATTCTCCATGTCCCCAAAACTCAGTAGACTCGGTTCAGTTCATCTCAATATGACTCAGGTTACTAAAGCTACCAAAAATTTCTCACCATCATTAAGGGTCGGCGAAGGAGGGTTTGGAACCGTCTATAAGGCGACGCTACAAGATGGCCAAGTGGTTGCCATAAAACGAGCAAGGAGGGAACACTTTGAATCTCTAAAAACTGAATTCAGGAGCGAGATTGAACTTCTAACCAAAATTGATCACCGTAATCTAGTGAAGCTTTTGGGTTTTGTTGATAAAGGAAATGAACGCCTTATTATTACGGAGTTTGTGCCAAATGGTACTCTTAGAGAACACTTGGACGGTACGAGGGGAAATTACTTGGATTTTAATCAGAGACTTGAAATCTCCATTGACGTGGCTCATGGTCTAACTTATCTACATCTATATGCAGGTGATGACAATCTCCATTCGGCATTCAAGAAGTACAATGAAGGGAATGTATTGGATATTGTGGACCCTCAAATTAAGGGTGCAGTTGATGAGGAGATTTTACAGCAAATGTTTGGGTTGGCTATCCAGTGTGCAGCACCCACTAGGTCTGATAGACCGGACATGAAGTCAGTGGGAGAGCAACTTTGGGGAATTAGAATGGACTACCTTAGAATTGGAAAGAAAGTGTAA

Network for GWHGAAZE024495

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	138	247	1.20E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.020
	SRR3591706	second leaf	24.210
	SRR3591707	mature leaf	39.694
	SRR3591708	Shoot apex	37.142
	SRR3591709	Stem	45.109
	SRR3591710	White floral bud	58.365
	SRR3591711	White flower	54.800
	SRR3591712	Green floral bud	53.081
	SRR3591713	Yellow flower	44.891
SRP173429	SRR8316895	Juvenile bud stage	16.129
	SRR8316896	Juvenile bud stage	22.706
	SRR8316897	Juvenile bud stage	11.154
	SRR8316894	Third green stage	10.717
	SRR8316900	Third green stage	34.413
	SRR8316901	Third green stage	31.353
	SRR8316898	Complete white stage	19.941
	SRR8316899	Complete white stage	47.601
	SRR8316903	Complete white stage	36.898
	SRR8316902	Silver flowering stage	19.337
	SRR8316904	Silver flowering stage	26.854
	SRR8316905	Silver flowering stage	16.615
	SRR8316906	Gold flowering stage	59.227
	SRR8316907	Gold flowering stage	44.281
	SRR8316908	Gold flowering stage	58.962
SRP132670	SRR6706286	Control	32.691
	SRR6706287	Light intensity 50%	31.038
	SRR6706288	Light intensity 20%	31.651
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.827
	CNS0095593	Slightly white alabastrum(diploid) 2	24.834
	CNS0095594	Slightly white alabastrum(diploid) 3	19.912
	CNS0095595	Whole white alabastrum(diploid) 2	17.629
	CNS0095596	Whole white alabastrum(diploid) 3	16.192
	CNS0095597	Whole white alabastrum(diploid) 4	17.019
	CNS0095598	Silvery flower (diploied) 1	31.084
	CNS0095599	Silvery flower (diploied) 2	26.069
	CNS0095600	Silvery flower (diploied) 3	41.126
	CNS0095601	Golden flower (diploid) 1	29.033
	CNS0095602	Golden flower (diploid) 2	38.358
	CNS0095603	Golden flower (diploid) 3	35.826
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.450
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.688
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.511
	CNS0095610	Silvery flower (tetraploid) 1	42.771
	CNS0095611	Silvery flower (tetraploid) 2	39.764
	CNS0095612	Silvery flower (tetraploid) 3	62.956
	CNS0095613	Golden flower (tetraploid) 1	35.933
	CNS0095614	Golden flower (tetraploid) 2	39.992
	CNS0095615	Golden flower (tetraploid) 3	47.694
CRA001975	CRR073297	Stem 1	29.973
	CRR073298	Stem 2	30.891
	CRR073299	Stem 3	22.830
	CRR073300	Leaf 1	32.631
	CRR073301	Leaf 2	32.580
	CRR073302	Leaf 3	21.783
	CRR073303	Juvenile bud 1	19.796
	CRR073304	Juvenile bud 2	18.509
	CRR073305	Juvenile bud 3	29.184
	CRR073306	Third green 1	25.925
	CRR073307	Third green 2	21.110
	CRR073308	Third green 3	25.611
	CRR073309	Second white 1	23.046
	CRR073310	Second white 2	23.016
	CRR073311	Second white 3	20.826
	CRR073312	Silver flowering 1	16.612
	CRR073313	Silver flowering 2	17.614
	CRR073314	Silver flowering 3	16.132
	CRR073315	Gold flowering 1	15.162
	CRR073316	Gold flowering 2	27.791
	CRR073317	Gold flowering 3	13.741
	CRR073318	Tawny withering 1	27.398
	CRR073319	Tawny withering 2	28.616
	CRR073320	Tawny withering 3	19.774