Detail information of GWHGAAZE024477


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002282408.10PREDICTED: CCR4-NOT transcription complex subunit 10 [Vitis vinifera]
trEMBLtr|F6HHB1|F6HHB1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB51607.1}
TAIR10AT5G35430.13E-102Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4327174943285234-
GWHAAZE00000007mRNA4327174943285234-
GWHAAZE00000007exon4327174943273560-
GWHAAZE00000007exon4327437943274429-
GWHAAZE00000007exon4327610743276268-
GWHAAZE00000007exon4327814143278212-
GWHAAZE00000007exon4327829643278382-
GWHAAZE00000007exon4327854543278706-
GWHAAZE00000007exon4328166243281748-
GWHAAZE00000007exon4328196843282048-
GWHAAZE00000007exon4328301343283210-
GWHAAZE00000007exon4328507043285234-
GWHAAZE00000007CDS4328507043285234-
GWHAAZE00000007CDS4328301343283210-
GWHAAZE00000007CDS4328196843282048-
GWHAAZE00000007CDS4328166243281748-
GWHAAZE00000007CDS4327854543278706-
GWHAAZE00000007CDS4327829643278382-
GWHAAZE00000007CDS4327814143278212-
GWHAAZE00000007CDS4327610743276268-
GWHAAZE00000007CDS4327437943274429-
GWHAAZE00000007CDS4327174943273560-
Transcript Sequence

Network for GWHGAAZE024477

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12607CNOT10 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.078
SRR3591706second leaf15.117
SRR3591707mature leaf14.760
SRR3591708Shoot apex20.936
SRR3591709Stem17.589
SRR3591710White floral bud20.927
SRR3591711White flower24.823
SRR3591712Green floral bud23.648
SRR3591713Yellow flower17.791
SRP173429 SRR8316895Juvenile bud stage 16.263
SRR8316896Juvenile bud stage 20.462
SRR8316897Juvenile bud stage 9.865
SRR8316894Third green stage 8.112
SRR8316900Third green stage 23.842
SRR8316901Third green stage 22.949
SRR8316898Complete white stage 9.237
SRR8316899Complete white stage 26.124
SRR8316903Complete white stage 16.282
SRR8316902Silver flowering stage10.132
SRR8316904Silver flowering stage14.591
SRR8316905Silver flowering stage6.289
SRR8316906Gold flowering stage 19.806
SRR8316907Gold flowering stage 20.515
SRR8316908Gold flowering stage 22.004
SRP132670SRR6706286Control20.569
SRR6706287Light intensity 50%20.945
SRR6706288Light intensity 20%22.683
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.697
CNS0095593Slightly white alabastrum(diploid) 210.599
CNS0095594Slightly white alabastrum(diploid) 311.403
CNS0095595Whole white alabastrum(diploid) 210.844
CNS0095596Whole white alabastrum(diploid) 39.842
CNS0095597Whole white alabastrum(diploid) 48.472
CNS0095598Silvery flower (diploied) 114.200
CNS0095599Silvery flower (diploied) 213.325
CNS0095600Silvery flower (diploied) 324.641
CNS0095601Golden flower (diploid) 113.443
CNS0095602Golden flower (diploid) 225.020
CNS0095603Golden flower (diploid) 324.011
CNS0095604Slightly white alabastrum(tetraploid) 113.527
CNS0095605Slightly white alabastrum(tetraploid) 210.467
CNS0095606Slightly white alabastrum(tetraploid) 327.101
CNS0095607Whole white alabastrum(tetraploid) 18.807
CNS0095608Whole white alabastrum(tetraploid) 25.671
CNS0095609Whole white alabastrum(tetraploid) 316.634
CNS0095610Silvery flower (tetraploid) 122.324
CNS0095611Silvery flower (tetraploid) 223.658
CNS0095612Silvery flower (tetraploid) 319.128
CNS0095613Golden flower (tetraploid) 111.299
CNS0095614Golden flower (tetraploid) 219.603
CNS0095615Golden flower (tetraploid) 317.232
CRA001975CRR073297Stem 124.628
CRR073298Stem 221.967
CRR073299Stem 321.628
CRR073300Leaf 125.629
CRR073301Leaf 223.885
CRR073302Leaf 319.103
CRR073303Juvenile bud 122.355
CRR073304Juvenile bud 216.271
CRR073305Juvenile bud 330.052
CRR073306Third green 114.210
CRR073307Third green 211.155
CRR073308Third green 312.247
CRR073309Second white 117.797
CRR073310Second white 213.049
CRR073311Second white 316.021
CRR073312Silver flowering 116.877
CRR073313Silver flowering 220.163
CRR073314Silver flowering 314.962
CRR073315Gold flowering 19.332
CRR073316Gold flowering 212.120
CRR073317Gold flowering 310.235
CRR073318Tawny withering 119.078
CRR073319Tawny withering 217.149
CRR073320Tawny withering 320.735