Gene detail

Detail information of GWHGAAZE024437

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011078374.1	0	PREDICTED: EIN3-binding F-box protein 1-like [Sesamum indicum]
COG	YP_008953.1	4E-19	hypothetical protein pc1954
Swissprot	tr\|Q9SKK0\|EBF1_ARATH	0	EIN3-binding F-box protein 1
trEMBL	tr\|F6HH95\|F6HH95_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51591.1}
TAIR10	AT2G25490.1	0	EIN3-binding F box protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	42272748	42274895	+
GWHAAZE00000007	mRNA	42272748	42274895	+
GWHAAZE00000007	exon	42272748	42272757	+
GWHAAZE00000007	exon	42272992	42274895	+
GWHAAZE00000007	CDS	42272748	42272757	+
GWHAAZE00000007	CDS	42272992	42274895	+

Transcript Sequence
>GWHTAAZE024471 ATGAACTTTTGTGAAGATGAATTCTATTCCGCAGGGTCCTTTTGCTCCGGTGATCCGGGGCTTTTATTTTCCGTTGGTTCCCATGGAGATGTTTACTGCCCTCCAAGAAAGAGGTCGCGTATTAGCGGCCCATTTATATTCAGTGAGGAAATATTTGACCAAGAAAAGAAAGCATCCATTGAAGTTCTTCCTGATGAATGCCTTTTCGAGATCTTTAGACACCTACCCGGTGGCCAAGAAAGAAGTGCCTCAGCTTGTGTATCAAAGCGTTGGCTTACAATCCTGAGCAGCGTTCGCAATTCCGAGATTGTGAAGAAAGCTGATGAGTCTTCAAAGGATGTTGATATGATTGAAGCAAATCAGGTAGATGAGAGCGATGGGTACCTTACAAGGTGCTTAGAAGGGAAGAAAGCAACTGATATTAGACTTGCTGCTATTGCAGTCGGAACTGCCACACGTGGGGGACTAGGCAAGCTTTCGGTTCGTGGGAGTAATTCGACCCGTGGGGTTACTGATCTTGGCTTTTCGGCGATTGCCCATGGTTGCCCTTCTCTTAGGGTTCTTTCTTTATGGAATGTCCCTTCTACAACGGATCAAGCTCTATTCGAGATAGCCAAAGAATGCCATTTGTTAGAAAAGCTTGATCTATGCCAGTGCCCTTCTATTTCCAACAAGGGTTTGATTGCAATTGCAGAAAATTGCCCCAATTTGAACTCTTTAACAATCGAATCCTGTTCGAATATTGGGAACGAGAGTCTACAAGCTATTGGAAGATGCTGCCCTAAGCTAAATTCCGTCGCCATCAAAGATTGCCCTCTTATTGGGGATCAGGGCATTGCAAGTCTCTTGTCCTCGGCTTCTTTGGCCCTGAGGAGGGTTAGACTTCAATCTTTGAACGTCACCGATTTCTCTCTTGCAGTAATCGGGCACTACGGTAAGGCGATTACTAATCTAGTCTTCACTGGGCTTCAGAATGTGAGCCAGAAGGGCTTCTGGGCTATGGGTAATGCTCAGGGTTTGCAAGCACTTGTCTCCTTGGCGATTACTTCATGCCGAGGAACAACAGATCTGAGCCTCGAGGCTATTGGAAAGGGTTGCCCTAGCCTTAAACAAATGTCCCTTCGTAAGTGTTGCTTTGTTTCTGATAATGGGTTGGTTGCTTTTGCCAAAGCTGTTGGTTCTCTCGAGAGCCTTCAGTTGGAGGAGTGCAATAGGATCACCCAATCAGGGATAATTGGTGCACTGTCAAACTGTAGTTCGAAGTTGAAGTCACTTGCCCTTGTGAAATGTATGGGGATCAAGGATCTTACACCCGAAACACCTACCCTCTCCCCATGTGAATCCCTTCGATCTTTGACCATCCGTAACTGCCTAGGGTTTGGTAGCGCTAGCCTAGCTATTGTGGGTCGGTTGTGTCCCCAACTACATCATATAGACCTCAGCGGGCTTTGTGGGATAACGGATGCAGGGCTACTCCCTCTTCTTGAGAGCTGTGAATCGGGTCTCGTTAAGGTCAACCTGAGTGACTGCTTGAATTTGACGGACGATGTGGTCTTGGCCTTGGCTCGGCTTCACGGTGGAACCCTAGAACTACTAAATCTTGAGGGGTGCAGGAAGGTAACCGATTCAAGCTTGGTTGCAATATCAGAGAACTGCCCGTTGCTCAACGATCTTGATGTATCAAAGTGTTCAATCACTGATTCTGGTGTCACTGCTTTATCAAAAGGAGTTCAGCTAGACTTGCAGGTCCTCTCTTTGTCTGGCTGCTCTAGGGTTTCTAACAAGAGTATGCCTTTCCTTAGAAAACTGGGCCAAAGCTTGGTAGGGCTAAATCTTCAAAACTGCAGTTCCATTAGCAGCAGCACAGTTGAGCGTCTTGTGGAGAACTTGTGGAGATGTGATATCCTCTCGTGA

Network for GWHGAAZE024437

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	61	95	1.40E-05
PF13516.7	LRR_6	472	494	0.86
PF13516.7	LRR_6	552	574	0.0085

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K14515	EBF1_2	MAPK signaling pathway - plant	map04016
K14515	EBF1_2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	76.091
	SRR3591706	second leaf	27.396
	SRR3591707	mature leaf	65.473
	SRR3591708	Shoot apex	32.912
	SRR3591709	Stem	67.461
	SRR3591710	White floral bud	62.025
	SRR3591711	White flower	140.402
	SRR3591712	Green floral bud	21.082
	SRR3591713	Yellow flower	143.247
SRP173429	SRR8316895	Juvenile bud stage	3.084
	SRR8316896	Juvenile bud stage	7.811
	SRR8316897	Juvenile bud stage	1.096
	SRR8316894	Third green stage	5.330
	SRR8316900	Third green stage	13.592
	SRR8316901	Third green stage	15.196
	SRR8316898	Complete white stage	18.086
	SRR8316899	Complete white stage	15.264
	SRR8316903	Complete white stage	41.092
	SRR8316902	Silver flowering stage	36.980
	SRR8316904	Silver flowering stage	59.931
	SRR8316905	Silver flowering stage	35.774
	SRR8316906	Gold flowering stage	119.487
	SRR8316907	Gold flowering stage	99.493
	SRR8316908	Gold flowering stage	139.060
SRP132670	SRR6706286	Control	29.910
	SRR6706287	Light intensity 50%	37.485
	SRR6706288	Light intensity 20%	34.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.949
	CNS0095593	Slightly white alabastrum(diploid) 2	5.509
	CNS0095594	Slightly white alabastrum(diploid) 3	5.953
	CNS0095595	Whole white alabastrum(diploid) 2	6.079
	CNS0095596	Whole white alabastrum(diploid) 3	7.420
	CNS0095597	Whole white alabastrum(diploid) 4	5.992
	CNS0095598	Silvery flower (diploied) 1	10.390
	CNS0095599	Silvery flower (diploied) 2	17.219
	CNS0095600	Silvery flower (diploied) 3	92.257
	CNS0095601	Golden flower (diploid) 1	13.872
	CNS0095602	Golden flower (diploid) 2	95.988
	CNS0095603	Golden flower (diploid) 3	92.587
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.710
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.363
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.254
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.368
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.583
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.197
	CNS0095610	Silvery flower (tetraploid) 1	90.914
	CNS0095611	Silvery flower (tetraploid) 2	65.727
	CNS0095612	Silvery flower (tetraploid) 3	104.021
	CNS0095613	Golden flower (tetraploid) 1	93.355
	CNS0095614	Golden flower (tetraploid) 2	140.408
	CNS0095615	Golden flower (tetraploid) 3	187.615
CRA001975	CRR073297	Stem 1	20.399
	CRR073298	Stem 2	17.746
	CRR073299	Stem 3	26.725
	CRR073300	Leaf 1	25.044
	CRR073301	Leaf 2	18.329
	CRR073302	Leaf 3	27.142
	CRR073303	Juvenile bud 1	23.262
	CRR073304	Juvenile bud 2	57.094
	CRR073305	Juvenile bud 3	34.964
	CRR073306	Third green 1	173.784
	CRR073307	Third green 2	176.324
	CRR073308	Third green 3	179.016
	CRR073309	Second white 1	334.993
	CRR073310	Second white 2	225.199
	CRR073311	Second white 3	328.060
	CRR073312	Silver flowering 1	443.944
	CRR073313	Silver flowering 2	653.158
	CRR073314	Silver flowering 3	562.152
	CRR073315	Gold flowering 1	48.408
	CRR073316	Gold flowering 2	69.773
	CRR073317	Gold flowering 3	99.341
	CRR073318	Tawny withering 1	102.014
	CRR073319	Tawny withering 2	53.965
	CRR073320	Tawny withering 3	101.569