Gene detail

Detail information of GWHGAAZE024434

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10414.1	0	unnamed protein product [Coffea canephora]
COG	YP_003981721.1	1E-31	phospholipase D
Swissprot	tr\|Q41142\|PLDA1_RICCO	0	Phospholipase D alpha 1 (Precursor)
trEMBL	tr\|A0A068UQ75\|A0A068UQ75_COFCA	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT3G15730.1	0	phospholipase D alpha 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	42159890	42163440	+
GWHAAZE00000007	mRNA	42159890	42163440	+
GWHAAZE00000007	exon	42159890	42159985	+
GWHAAZE00000007	exon	42160779	42162678	+
GWHAAZE00000007	exon	42163007	42163440	+
GWHAAZE00000007	CDS	42159890	42159985	+
GWHAAZE00000007	CDS	42160779	42162678	+
GWHAAZE00000007	CDS	42163007	42163440	+

Transcript Sequence
>GWHTAAZE024468 ATGGATGAGCATGTTTTGCTACATGGAATTCTTCTGGTCACCGTTTATGAGATTGATAAGCTCCATTTGCGTTTTCCTCGCAAAATTATCCATAAGGTAGTGAAAGAGTTAGAAGAAGCAGTGGGATTTACAGAAACAGCTTCAAAACTCTACGCAACAATAGACTTAGAAAAGGCGAGAGTTGGTCGAACAAGACTCATAGACTGCAACCACTCGCACCCGAAATGGGACCAGTCGTTCCACATTTACTGTGCCCATGTGACTTCAAATGTGAGCTTTAGCATCAAAGAAGACCAACCAATAGGTGCATCCCACATTGGAAGAGCTCAAATTCCCATTCAAGAAGTCCTAAACGGCAATGAAATCGATAAATGGCTTGACATCTTTCATAAACACAATAAGCCAATTCATGGTCACTCTAAGCTCCATGTGAAACTTCAATTCTTCGACATTTCTCAAGACCGTAATTGGTGCAGAGGAATTAGAAGTGAGAACTTTCGGGGGGTACCCTATACTTTCTTTCCCCAAAGAAATGGATGCAAAGTTTCTCTTTACCAAGATGCTCATGTCCCAAACGGATTCATCACCAAAATCCCTCTTTCGGGCGGGAAATTTTACGAGCCACAAAGGTGTTGGGAAGACATTTTCGATGCCATTTCTAAGGCGAAGCACTTGATTTACATCGCGGGTTGGTCTGTTTACACTAAAATCATATTAATAAGGGACCCTAAGAGGCAAAAGCCAGGTGGAGACAAGACTCTAGGCGAGATACTTAAGAAGAAGGCCAAAGAAGGAGTAAGAGTACTAGTTCTTGTTTGGGACGATAGAACTTCGACAAATGTACTAAAAAGGAATGGTTTGATGCATACCCATGATGAGGAAACCGGAGAGTACTTCTACAATAGTGAAGTACATTGCGTTTTGTGTCCTCGAAATCCAGATAACGGGCGAAGTATCATTCAAGACTTTGAAATTTCAACCATGTTTACTCATCACCAGAAGATCATAGTGGTGGATAGTGAAATGCCTAATGGAAATGACGAAAGGAGGAGAATTGTGAGCTTTGTTGGAGGTATTGATCTTTGTGATGGGAGATACGATACTCCGTCTCACAGCATATTCGGTACTTTAGGCACAGCCCACCACAATGATTTTCACCAGCCAAATTTTGCTGGTGCATCTATTGAAAAGGGTGGTCCGAGGGAGCCTTGGCACGACATTCACACGCGGTTAGAAGGGCCGGTTGCTTGGGATGTACTCTTTAACTTCGAGCAAAGATGGTGGAAGCAAGGGGGAAAAGATTTGTTAGTCAAACTTAGAGAACTAGATGAAATTTTCATATCCCCATCACCGGTTATGTACCCCCAAGACCAAGAAACATGGAGCGTTCAATTGTTCCGGTCCATCGATGGTGGGGCCGCATTTGGCTTCCCAGAAGATCCTGATTGTGTGGCTAAAGCTGGTTTGGTGTGTGGGAAAGATAACATTATTGATAGGAGTATTCAAGACGGTTATATAAACGCCATTCGAAGAGCAAAGAACTTCATTTACATTGAAAACCAATACTTTCTTGGAAGTTCTTTCGCTTGGAATTCAAAAGACCTCGAAGATGAAGAAGTTGGCGCTTTACACTTGATCCCAAAAGAACTATCACTGAAGATTGTTAGTAAAATCGAGGCCGGAGAGAGGTTTACAGTCTATGTTGTGATCCCAATGTGGCCGGAGGGTATACCGGAGATTGCATCGGTTCAAGCTATATTGAATTGGCAAAAGAGGACTATGGAAATGATGTATACTGATATAGCTAAAGCACTTAAAGCTAAGGGGATTGAAGCAAACTTAAAGGACTATTTGACATTCTTTTGCTTAGGAAACAGAGAGAAAAAGGAGAATGAAGAATATGTGCCATTACAGAAGCCACCAAGCAATTCGGATTACAGTAGAGCTCAAGAATCAAGAAGGTTTATGATCTATGTTCATGCTAAGATGATGATAGTTGATGATGAATACATAATAATTGGATCAGCCAACATCAACCAAAGGTCCATGGATGGTGCCCGAGACTCCGAAATCGCAATGGGAGCCTACCAACCCCAGCACCTAGCCACCTCCAACCCAGCCAGGGGTCAGATCCATGGCTTTAGAATGGCTCTATGGTATGAGCACTTGGGCATGCTAGACGATTCCTTTGTTCGACCAGAGTCCCTAGAATGCATCCAAAAGGTCAACCGCATGTCTGAAAAGTACTGGAATCTCTACTCGGGCGAGACACTTGAAGAGGACTTGCCAGGTCACCTACTGAGCTACCCGGTTAGAGTCAGTGCCAATGGGGAGATCACTGAGTTGCCCGGGATGGAGCATTTCCCGGATACTAGAGCTCGAGTCCTGGGATCCACAAGTGAATTCCTCCCTCCGATTCTGACCACTTGA

Network for GWHGAAZE024434

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	10	127	5.80E-12
PF00614.23	PLDc	327	365	2.90E-10
PF00614.23	PLDc	656	682	1.30E-07
PF12357.9	PLD_C	727	798	2.00E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	biological_process	phosphatidylcholine metabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.083
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.034
	SRR3591709	Stem	0.041
	SRR3591710	White floral bud	0.664
	SRR3591711	White flower	1.637
	SRR3591712	Green floral bud	0.855
	SRR3591713	Yellow flower	0.686
SRP173429	SRR8316895	Juvenile bud stage	0.167
	SRR8316896	Juvenile bud stage	0.143
	SRR8316897	Juvenile bud stage	0.155
	SRR8316894	Third green stage	0.056
	SRR8316900	Third green stage	0.117
	SRR8316901	Third green stage	0.224
	SRR8316898	Complete white stage	0.086
	SRR8316899	Complete white stage	0.887
	SRR8316903	Complete white stage	0.370
	SRR8316902	Silver flowering stage	0.162
	SRR8316904	Silver flowering stage	0.278
	SRR8316905	Silver flowering stage	0.028
	SRR8316906	Gold flowering stage	0.738
	SRR8316907	Gold flowering stage	0.807
	SRR8316908	Gold flowering stage	1.716
SRP132670	SRR6706286	Control	0.111
	SRR6706287	Light intensity 50%	0.152
	SRR6706288	Light intensity 20%	0.140
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.138
	CNS0095593	Slightly white alabastrum(diploid) 2	0.157
	CNS0095594	Slightly white alabastrum(diploid) 3	0.052
	CNS0095595	Whole white alabastrum(diploid) 2	0.024
	CNS0095596	Whole white alabastrum(diploid) 3	0.017
	CNS0095597	Whole white alabastrum(diploid) 4	0.027
	CNS0095598	Silvery flower (diploied) 1	0.296
	CNS0095599	Silvery flower (diploied) 2	0.277
	CNS0095600	Silvery flower (diploied) 3	0.309
	CNS0095601	Golden flower (diploid) 1	0.226
	CNS0095602	Golden flower (diploid) 2	0.510
	CNS0095603	Golden flower (diploid) 3	0.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.020
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.058
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.053
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.055
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.052
	CNS0095610	Silvery flower (tetraploid) 1	0.170
	CNS0095611	Silvery flower (tetraploid) 2	0.208
	CNS0095612	Silvery flower (tetraploid) 3	0.574
	CNS0095613	Golden flower (tetraploid) 1	0.347
	CNS0095614	Golden flower (tetraploid) 2	3.080
	CNS0095615	Golden flower (tetraploid) 3	0.531
CRA001975	CRR073297	Stem 1	0.237
	CRR073298	Stem 2	0.155
	CRR073299	Stem 3	0.585
	CRR073300	Leaf 1	0.236
	CRR073301	Leaf 2	0.302
	CRR073302	Leaf 3	0.149
	CRR073303	Juvenile bud 1	0.293
	CRR073304	Juvenile bud 2	0.190
	CRR073305	Juvenile bud 3	0.117
	CRR073306	Third green 1	0.623
	CRR073307	Third green 2	0.882
	CRR073308	Third green 3	0.720
	CRR073309	Second white 1	0.492
	CRR073310	Second white 2	0.314
	CRR073311	Second white 3	0.902
	CRR073312	Silver flowering 1	1.416
	CRR073313	Silver flowering 2	1.145
	CRR073314	Silver flowering 3	1.949
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.318
	CRR073319	Tawny withering 2	0.215
	CRR073320	Tawny withering 3	0.116