Gene detail

Detail information of GWHGAAZE024426

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACU17965.1	3.1447E-85	unknown [Glycine max]
COG	YP_001940829.1	5E-45	Chaperone DnaK (HSP70)
Swissprot	tr\|Q9LHA8\|MD37C_ARATH	8E-85	Probable mediator of RNA polymerase II transcription subunit 37c
trEMBL	tr\|C6T813\|C6T813_SOYBN	1E-85	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU17965.1}
TAIR10	AT3G12580.1	3E-55	heat shock protein 70

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	41993524	41994078	-
GWHAAZE00000007	mRNA	41993524	41994078	-
GWHAAZE00000007	exon	41993524	41994078	-
GWHAAZE00000007	CDS	41993524	41994078	-

Transcript Sequence
>GWHTAAZE024460 ATGATGACAGTGCTAATCCCAAGGAACACAAGTATTCCTACGAAGAAGGAGCAGGTGTTCAGTACCTACTGTGATAACCAATATGCTGTGCTGATCCAAGTATATGAGGGCGAGAGGTCAAAAGCTACAGGCAACAATTTGTTGGGCAAGTTTCAGCTTTCTCAGATCCCTCCAGCTCCTAAGGGAGTTCCTCGTATCAAAGTTTGCTTTGCATTGGATTCCAATGGCATCCTAAATGTTTCGGCAGAGGACATGAGCACTGAGCTTAAGAATGAGATTACAATTACCAATGGAAGAAGACGCTCCAAGGAAGAGATTGAGAAGATGATACAAGTGGCTGAAAAGTACAAAGCTGAGGACAAGGAGCACAAGAAGAAGATGGATGCAAAGCATTCATTGGCGGACTATGTTTACAAAATGAAGAAATACATCAAGAAGATTGGCACCGAGATTGAGCAAGCGGACAAGAATGAGATAGAGGACGCGATTGACAAGACATCAGAGTGGGTGGACAGCAACCAGCTTGCAGAAGCGGATGAGTTTGAAGACAAGCAG

Network for GWHGAAZE024426

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.21	HSP70	2	179	7.60E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03283	HSPA1s	Spliceosome	map03040
		Protein processing in endoplasmic reticulum	map04141
		MAPK signaling pathway	map04010
		Endocytosis	map04144
		Antigen processing and presentation	map04612
		Estrogen signaling pathway	map04915
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.383
	SRR3591706	second leaf	0.336
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.117
	SRR3591709	Stem	0.207
	SRR3591710	White floral bud	1.020
	SRR3591711	White flower	0.281
	SRR3591712	Green floral bud	1.713
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.723
	SRR8316896	Juvenile bud stage	2.099
	SRR8316897	Juvenile bud stage	1.347
	SRR8316894	Third green stage	0.863
	SRR8316900	Third green stage	2.532
	SRR8316901	Third green stage	4.342
	SRR8316898	Complete white stage	0.351
	SRR8316899	Complete white stage	1.395
	SRR8316903	Complete white stage	0.263
	SRR8316902	Silver flowering stage	0.401
	SRR8316904	Silver flowering stage	0.327
	SRR8316905	Silver flowering stage	0.120
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.611
	SRR8316908	Gold flowering stage	0.105
SRP132670	SRR6706286	Control	1.642
	SRR6706287	Light intensity 50%	1.218
	SRR6706288	Light intensity 20%	1.264
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.193
	CNS0095593	Slightly white alabastrum(diploid) 2	4.561
	CNS0095594	Slightly white alabastrum(diploid) 3	3.775
	CNS0095595	Whole white alabastrum(diploid) 2	5.164
	CNS0095596	Whole white alabastrum(diploid) 3	5.362
	CNS0095597	Whole white alabastrum(diploid) 4	1.977
	CNS0095598	Silvery flower (diploied) 1	2.171
	CNS0095599	Silvery flower (diploied) 2	3.705
	CNS0095600	Silvery flower (diploied) 3	1.574
	CNS0095601	Golden flower (diploid) 1	5.192
	CNS0095602	Golden flower (diploid) 2	1.898
	CNS0095603	Golden flower (diploid) 3	1.298
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.080
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.826
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.107
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.660
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.367
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.964
	CNS0095610	Silvery flower (tetraploid) 1	0.368
	CNS0095611	Silvery flower (tetraploid) 2	0.252
	CNS0095612	Silvery flower (tetraploid) 3	0.507
	CNS0095613	Golden flower (tetraploid) 1	0.355
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.531
	CRR073298	Stem 2	0.978
	CRR073299	Stem 3	0.957
	CRR073300	Leaf 1	1.245
	CRR073301	Leaf 2	0.923
	CRR073302	Leaf 3	1.377
	CRR073303	Juvenile bud 1	0.372
	CRR073304	Juvenile bud 2	0.302
	CRR073305	Juvenile bud 3	0.039
	CRR073306	Third green 1	0.269
	CRR073307	Third green 2	0.059
	CRR073308	Third green 3	0.231
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.032
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.062
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.236
	CRR073319	Tawny withering 2	1.118
	CRR073320	Tawny withering 3	2.095