Gene detail

Detail information of GWHGAAZE024419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273755.1	0	PREDICTED: SCY1-like protein 2 [Vitis vinifera]
COG	YP_007201689.1	0.00000002	WD domain, G-beta repeat-containing protein,protein kinase family protein
Swissprot	tr\|O23236\|MPK14_ARATH	8E-10	Mitogen-activated protein kinase 14
trEMBL	tr\|D7SN24\|D7SN24_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17053.3}
TAIR10	AT1G22870.1	0	Protein kinase family protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	41846910	41861847	-
GWHAAZE00000007	mRNA	41846910	41861847	-
GWHAAZE00000007	exon	41861359	41861847	-
GWHAAZE00000007	exon	41859334	41859438	-
GWHAAZE00000007	exon	41858549	41858659	-
GWHAAZE00000007	exon	41856126	41856308	-
GWHAAZE00000007	exon	41854081	41854249	-
GWHAAZE00000007	exon	41853684	41853745	-
GWHAAZE00000007	exon	41852896	41852982	-
GWHAAZE00000007	exon	41851366	41851452	-
GWHAAZE00000007	exon	41850626	41850739	-
GWHAAZE00000007	exon	41850127	41850255	-
GWHAAZE00000007	exon	41849851	41849913	-
GWHAAZE00000007	exon	41849456	41849617	-
GWHAAZE00000007	exon	41849224	41849342	-
GWHAAZE00000007	exon	41846910	41847756	-
GWHAAZE00000007	CDS	41861359	41861847	-
GWHAAZE00000007	CDS	41859334	41859438	-
GWHAAZE00000007	CDS	41858549	41858659	-
GWHAAZE00000007	CDS	41856126	41856308	-
GWHAAZE00000007	CDS	41854081	41854249	-
GWHAAZE00000007	CDS	41853684	41853745	-
GWHAAZE00000007	CDS	41852896	41852982	-
GWHAAZE00000007	CDS	41851366	41851452	-
GWHAAZE00000007	CDS	41850626	41850739	-
GWHAAZE00000007	CDS	41850127	41850255	-
GWHAAZE00000007	CDS	41849851	41849913	-
GWHAAZE00000007	CDS	41849456	41849617	-
GWHAAZE00000007	CDS	41849224	41849342	-
GWHAAZE00000007	CDS	41846910	41847756	-

Transcript Sequence
>GWHTAAZE024453 ATGTCGCTCAACATGAAAACATTCACCCAAGCCCTAGCCAAAACCGCCGCAGTAATCGAAAAAACCGTACAAACCACCGTACAGGAAGTAACCGGACCCAAACCCCTCCAAGACTACGAACTCCTCCACCAGATCGGCTCCGCCGGCCCCGCCCTCTCCTGGAAGCTCTTCTCTGCCAAGCCACGTGTCCCCTCCAATCATCAATACCCCACCGTCTGCGTCTGGCTGCTCGACAAACGCTCCCTTAGCGAGTCCAGGACACGCGCCGGTCTCTCCAAGGCGGCCGAGGACTCCTTTCTCGAGATAATTAGGGCGGATGCGGCGAAGCTGGTGAGGCTGAGGCACCCTGGGGTGGTGCACGTGGTTCAGGGATTGGACGAGAATAAGAATGCCATGGCTATGGTAACCGAGCCTTTGTTTGCTTCTTTGGCTAATGCGCTTGGAAATGTGGATAATATTAACAACGTGCCTAAGGAGCTTAAAGGAATGGAAATGGGATTGTTAGAGGTGAAGCATGGTTTGCTCCAGATTGCAGAATCATTGGACTTTGTCCATAATACTGCGCATCTTATTCATCGGGCTCTATCTCCTGAGACAGTCCTAATTACCTCAAATGGAGCTTGGAAGCTTTGTGGATTTGGTTTTGCAGTCTCTGCTGATCCGTCGTCCACTGATTTGCCTAATGCACAGGCCTTCCATTATGCTGAATATGATGTTGAAGACTCAATGTTGCCCCTTCAACCATCATTGAACTATACTGCTCCTGAACTAGTTCGGAGTAAAGCATCTTCGGCTGGGTGTTATTCTGATATTTTCAGTTATGGTTGCCTTGCTTACCACTTGATTGCTCGAAAGCCTTTGCTGGACTGTCACAACAATGTCAAGATGGTCCTCCAGTTTGTTAATAGGTCTTCTGCAACTTTTTCGCAGTACACAAACAATTTAACTTACTTATCAAGCGAGGCTTTCTCATCCATTCCGTCTGAGTTAGTTCCGGACTTGCAAAGAATGCTTTCAGCAAATGAGGCTTCCAGGCCAACAGCCTTGGATTTTACAGGTTCTCGTTTTTTCAGGGATGACACTAGGTTGCGTGCTCTTCGCTTCCTTGACCACATGCTTGAAAGAGATAACATGCAGAAGTCGGAGTTTCTAAAAGCATTATCAGAGATGTGGAAAGATTTTGACTCCCGCGTGTTGCGGTATAAGGTTCTTCCACCTCTTTGTGCGGAGCTTCGAAATATGGTAATGCAACCAATGATTCTGCCCATGGTTATGACAATAGCCAAGTCTCAGGATAAAAATGATTTTGAGCTATCAACGCTACCAGCTCTAGTTCCCGTCCTGAGTACTGCTGCAGGCGAGACGCTATTGTTACTTGTGAAGAATGCAGAGCTTATTATGAACAAGGCTAGTCAAGATCACTTAGTGTCACATATCCTGCTCATGCTTGTTCGAGCATATGATGATAATGATGTTCGAATCCAAGAGGAAGTTCTAAAAAAGACGGTTTCTCTTTCTAAGCAACTTAATGTTCAGGTAGTGAAACAAGCTATTTTGCCTCGTGTTCATCGCATGGCACTTAGAACAACTGTTGCTGCTGTCAGAGTGAATGCTTTGTTATGTTTAGGTGATATGGTTCAGATACTTGATCAGCCGGCTGCCTTAGAGATTTTGCAAACGATCCACCGTTGCACTGCTGTAGATCGTTCTGCTCCAACCCTTATGTGTACCCTTGGGGTCGCAAATTCAATGTTGAAGCAGCATGGAGTAGACTTTGCAGCAGAGCATGTCCTTCCTCTGCTCACACCTCTTCTTGTTGCCCAACAATTGAATGTTCAGCAGTTTGCGAAGTATATGCTGTTTATTAAGGATATTCTAAGGAAGATAGAAGTAAAAAGAGGAGTAACTCTGACCAATTCTGGAATTTCAGAGGTAAAACCACCACCTGCTGTGGAAGTACGTCAACCAGAACCTATAAAGAAAACCACCACTCCTCCTTACTCTACTGCAAAGACTGGTCATGCCTGGGATGAAGATTGGGTCCCACCGAACCCGAAGGGATCTACCACTACTAATCCACAGTCTTCCTTTCAGCCTGTTATATCCAATCAGCCCATTCAAGTCCCTTCTGCAAGCCCACAATCCACGGTCCCATCTGCTGTTGATATAGAGTGGCCCCCACGTTCATCTCCGAGTATTGTCCCTCAAATAGGTGATGATAAAGACAAGGAAAATCAAAACGGACTTGTACCCGACTCGAGTTTCGACGATATAGACCCATTTGCCAACTGGCCCCCTCGACCCACCAGCTCTTTAGGTGCACCTGGATCTTCGATCGCCTCTTCTTCCAACAAAATTGGGTCCGGTTTGAATTCAAGTACCCCAAATAGCCTAAACTCTCTAGCCAACAATAATGCCTCTTGGACCCAAAATTCATACCAAGGGAATTCTACATTGAATATTGCTAGTCTTGATAGCTTATTACTCAACCCGCAAAGCTCGATTGGGTCTTTGAAAAACAGTCAGAGTGGGCCAGGTCAGAAAGCAATGGATCTTGGATCTGTATTTGGTTCTAGTAAAAGTGAGCAGGGTGCACCGAGACTTGCTCCACCCCCAGTGAATGCTGTGGGTAGAGGGAGGGGAAGAGGTAGAGGAAATCAAGGCCAACCACGGTCTTCCCGGTCCAAATCAGGGTCGGACCAGCCGCCTCTACTTGATTTGCTGTAG

Network for GWHGAAZE024419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	101	357	3.60E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	SCY1_SCYL2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.063
	SRR3591706	second leaf	5.076
	SRR3591707	mature leaf	2.163
	SRR3591708	Shoot apex	10.703
	SRR3591709	Stem	7.810
	SRR3591710	White floral bud	8.326
	SRR3591711	White flower	5.581
	SRR3591712	Green floral bud	13.808
	SRR3591713	Yellow flower	2.100
SRP173429	SRR8316895	Juvenile bud stage	7.220
	SRR8316896	Juvenile bud stage	12.535
	SRR8316897	Juvenile bud stage	7.572
	SRR8316894	Third green stage	6.632
	SRR8316900	Third green stage	15.275
	SRR8316901	Third green stage	14.422
	SRR8316898	Complete white stage	1.086
	SRR8316899	Complete white stage	7.143
	SRR8316903	Complete white stage	4.786
	SRR8316902	Silver flowering stage	2.363
	SRR8316904	Silver flowering stage	4.724
	SRR8316905	Silver flowering stage	1.159
	SRR8316906	Gold flowering stage	3.936
	SRR8316907	Gold flowering stage	3.675
	SRR8316908	Gold flowering stage	3.641
SRP132670	SRR6706286	Control	11.828
	SRR6706287	Light intensity 50%	11.424
	SRR6706288	Light intensity 20%	11.557
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.722
	CNS0095593	Slightly white alabastrum(diploid) 2	12.781
	CNS0095594	Slightly white alabastrum(diploid) 3	13.337
	CNS0095595	Whole white alabastrum(diploid) 2	17.656
	CNS0095596	Whole white alabastrum(diploid) 3	19.581
	CNS0095597	Whole white alabastrum(diploid) 4	17.683
	CNS0095598	Silvery flower (diploied) 1	6.064
	CNS0095599	Silvery flower (diploied) 2	5.898
	CNS0095600	Silvery flower (diploied) 3	7.830
	CNS0095601	Golden flower (diploid) 1	6.796
	CNS0095602	Golden flower (diploid) 2	7.207
	CNS0095603	Golden flower (diploid) 3	7.371
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.558
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.418
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.326
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.917
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.597
	CNS0095610	Silvery flower (tetraploid) 1	6.245
	CNS0095611	Silvery flower (tetraploid) 2	9.117
	CNS0095612	Silvery flower (tetraploid) 3	6.452
	CNS0095613	Golden flower (tetraploid) 1	2.832
	CNS0095614	Golden flower (tetraploid) 2	3.515
	CNS0095615	Golden flower (tetraploid) 3	4.833
CRA001975	CRR073297	Stem 1	20.112
	CRR073298	Stem 2	16.706
	CRR073299	Stem 3	9.549
	CRR073300	Leaf 1	24.549
	CRR073301	Leaf 2	20.737
	CRR073302	Leaf 3	10.052
	CRR073303	Juvenile bud 1	14.257
	CRR073304	Juvenile bud 2	6.347
	CRR073305	Juvenile bud 3	11.077
	CRR073306	Third green 1	3.588
	CRR073307	Third green 2	2.604
	CRR073308	Third green 3	4.422
	CRR073309	Second white 1	1.183
	CRR073310	Second white 2	1.814
	CRR073311	Second white 3	2.129
	CRR073312	Silver flowering 1	3.400
	CRR073313	Silver flowering 2	3.621
	CRR073314	Silver flowering 3	1.650
	CRR073315	Gold flowering 1	2.282
	CRR073316	Gold flowering 2	2.400
	CRR073317	Gold flowering 3	1.246
	CRR073318	Tawny withering 1	7.518
	CRR073319	Tawny withering 2	4.699
	CRR073320	Tawny withering 3	8.232