Detail information of GWHGAAZE024418


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009763332.10PREDICTED: mannan endo-1,4-beta-mannosidase 5-like [Nicotiana sylvestris]
COGYP_003324408.11E-62glycoside hydrolase family protein
Swissprottr|Q6YM50|MAN5_SOLLC0Mannan endo-1,4-beta-mannosidase 5 (Precursor)
trEMBLtr|Q8H6B4|Q8H6B4_DAUCA0Endo-beta-mannanase {ECO:0000313|EMBL:AAN34823.1}
TAIR10AT5G66460.18E-118Glycosyl hydrolase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4183088941833091+
GWHAAZE00000007mRNA4183088941833091+
GWHAAZE00000007exon4183088941831212+
GWHAAZE00000007exon4183148841831682+
GWHAAZE00000007exon4183178341831905+
GWHAAZE00000007exon4183200741832209+
GWHAAZE00000007exon4183266841833091+
GWHAAZE00000007five_prime_UTR4183088941831047+
GWHAAZE00000007CDS4183104841831212+
GWHAAZE00000007CDS4183148841831682+
GWHAAZE00000007CDS4183178341831905+
GWHAAZE00000007CDS4183200741832209+
GWHAAZE00000007CDS4183266841833091+
Transcript Sequence

Network for GWHGAAZE024418

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0121GO:0016844 strictosidine synthase activity GOslim:molecular_function
GO:0009058 biosynthetic process GOslim:biological_process
Transcription factor LOB family Transcription factor LOB


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00150.19Cellulase152801.30E-16
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K19355MAN Metabolic pathways map01100
Fructose and mannose metabolismmap00051

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE024418.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100110120130140Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.116
SRR3591711White flower0.000
SRR3591712Green floral bud14.202
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 23.318
SRR8316896Juvenile bud stage 126.623
SRR8316897Juvenile bud stage 14.677
SRR8316894Third green stage 20.711
SRR8316900Third green stage 13.363
SRR8316901Third green stage 10.120
SRR8316898Complete white stage 0.221
SRR8316899Complete white stage 0.199
SRR8316903Complete white stage 0.238
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control27.439
SRR6706287Light intensity 50%26.664
SRR6706288Light intensity 20%35.109
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.433
CNS0095593Slightly white alabastrum(diploid) 214.949
CNS0095594Slightly white alabastrum(diploid) 361.888
CNS0095595Whole white alabastrum(diploid) 25.238
CNS0095596Whole white alabastrum(diploid) 35.794
CNS0095597Whole white alabastrum(diploid) 43.993
CNS0095598Silvery flower (diploied) 10.064
CNS0095599Silvery flower (diploied) 20.034
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 15.424
CNS0095605Slightly white alabastrum(tetraploid) 22.871
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.552
CNS0095608Whole white alabastrum(tetraploid) 20.369
CNS0095609Whole white alabastrum(tetraploid) 372.282
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.027
CNS0095613Golden flower (tetraploid) 10.054
CNS0095614Golden flower (tetraploid) 20.041
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 147.876
CRR073298Stem 235.958
CRR073299Stem 381.911
CRR073300Leaf 13.413
CRR073301Leaf 21.520
CRR073302Leaf 32.244
CRR073303Juvenile bud 10.137
CRR073304Juvenile bud 20.344
CRR073305Juvenile bud 30.054
CRR073306Third green 10.000
CRR073307Third green 20.040
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.071
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000