Gene detail

Detail information of GWHGAAZE024395

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006478298.1	2.6941E-175	PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Citrus sinensis]
Swissprot	tr\|Q9XF89\|CB5_ARATH	4E-151	Chlorophyll a-b binding protein CP26, chloroplastic (Precursor)
trEMBL	tr\|V4TTK5\|V4TTK5_9ROSI	5E-175	Uncharacterized protein {ECO:0000313\|EMBL:ESR55075.1}
TAIR10	AT4G10340.1	1E-113	light harvesting complex of photosystem II 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	41481638	41483627	+
GWHAAZE00000007	mRNA	41481638	41483627	+
GWHAAZE00000007	exon	41481638	41481845	+
GWHAAZE00000007	exon	41482062	41482146	+
GWHAAZE00000007	exon	41482263	41482313	+
GWHAAZE00000007	exon	41482509	41482629	+
GWHAAZE00000007	exon	41482771	41482905	+
GWHAAZE00000007	exon	41483307	41483627	+
GWHAAZE00000007	CDS	41481638	41481845	+
GWHAAZE00000007	CDS	41482062	41482146	+
GWHAAZE00000007	CDS	41482263	41482313	+
GWHAAZE00000007	CDS	41482509	41482629	+
GWHAAZE00000007	CDS	41482771	41482905	+
GWHAAZE00000007	CDS	41483307	41483627	+

Transcript Sequence
>GWHTAAZE024429 ATGGCTTCCATGACCGCAGCTGCCTCTCTCGGCGTGAAGGAAATGCTAGGTAACCCTCTCAACTTCAGCGGTGCATCAAGGTCGGCTTCATCTGCATCAAGCCCTGCCAACTTCAAGATTGTATCCCTTTTCTCCAAGAAGAAGGCTGCTCCCAAAGCCAAGGCTGCTGCTGTCTCTCCCTTGGATGACGAGCTTGCCAAGTGGTACGGCCCTGAAAGAAGAATTTTCTTGCCTGAAGGTCTATTGGACCGATCAGAAATTCCAGAGTACCTCACAGGAGAAGTCCCCGGAGATTATGGATATGATCCTTTTGGGCTCGGCAAGAAACCAGAAAACTTTGCCAAATACCAATCATATGAGCTGATTCACGCGCGGTGGGCCATGCTCGGTGCTGCCGGATGCATCATCCCTGAGGCCTTCAACAAATTTGGGGCTAACTGCGGCCCCGAAGCTGTCTGGTTCAAGACCGGAGCTCTACTATTGGACGGGAATACATTGAATTATTTTGGAAAGAACATTCCCATTAACTTGGTTCTTGCTGTGGTTGCTGAGGTTGTTCTTCTTGGTGGTGCTGAATACTACAGACTTACCAATGGCTTAGATTTGGAGGACAAACTTCACCCAGGGGGTCCATTCGATCCATTGGGGTTAGCAAAGGATCCAGACCAGGCGGCGATATTAAAAGTAAAGGAGATAAAGAACGGTAGGCTAGCAATGTTCTCCATGTTCGCTTTCTTCATCCAAGCTTATGTCACTGGAGAGGGTCCAGTCGAGAACCTCGCTTCCCATTTGAGCGATCCTTTTGGTAACAATTTGCTCACCGTCATTGGCGGATCCATCGAAAGAGCACCTACCCTTTGATTTGCATTTGCATTTGATGTCATTCTCATCTTTTGCTCTGCTACCTCTTTTGAAATTTAA

Network for GWHGAAZE024395

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	88	249	2.80E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08916	LHCB5	Metabolic pathways	map01100
K08916	LHCB5	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	792.154
	SRR3591706	second leaf	1430.757
	SRR3591707	mature leaf	1330.083
	SRR3591708	Shoot apex	1290.037
	SRR3591709	Stem	531.042
	SRR3591710	White floral bud	66.931
	SRR3591711	White flower	87.949
	SRR3591712	Green floral bud	63.012
	SRR3591713	Yellow flower	17.014
SRP173429	SRR8316895	Juvenile bud stage	468.330
	SRR8316896	Juvenile bud stage	406.252
	SRR8316897	Juvenile bud stage	295.400
	SRR8316894	Third green stage	127.076
	SRR8316900	Third green stage	208.937
	SRR8316901	Third green stage	207.543
	SRR8316898	Complete white stage	25.234
	SRR8316899	Complete white stage	134.004
	SRR8316903	Complete white stage	82.224
	SRR8316902	Silver flowering stage	17.389
	SRR8316904	Silver flowering stage	27.729
	SRR8316905	Silver flowering stage	10.359
	SRR8316906	Gold flowering stage	43.371
	SRR8316907	Gold flowering stage	40.209
	SRR8316908	Gold flowering stage	45.642
SRP132670	SRR6706286	Control	231.838
	SRR6706287	Light intensity 50%	143.953
	SRR6706288	Light intensity 20%	136.977
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	375.043
	CNS0095593	Slightly white alabastrum(diploid) 2	243.318
	CNS0095594	Slightly white alabastrum(diploid) 3	320.149
	CNS0095595	Whole white alabastrum(diploid) 2	187.097
	CNS0095596	Whole white alabastrum(diploid) 3	166.132
	CNS0095597	Whole white alabastrum(diploid) 4	135.605
	CNS0095598	Silvery flower (diploied) 1	758.130
	CNS0095599	Silvery flower (diploied) 2	694.481
	CNS0095600	Silvery flower (diploied) 3	216.517
	CNS0095601	Golden flower (diploid) 1	725.097
	CNS0095602	Golden flower (diploid) 2	500.214
	CNS0095603	Golden flower (diploid) 3	480.079
	CNS0095604	Slightly white alabastrum(tetraploid) 1	360.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	366.407
	CNS0095606	Slightly white alabastrum(tetraploid) 3	606.858
	CNS0095607	Whole white alabastrum(tetraploid) 1	188.275
	CNS0095608	Whole white alabastrum(tetraploid) 2	129.241
	CNS0095609	Whole white alabastrum(tetraploid) 3	243.498
	CNS0095610	Silvery flower (tetraploid) 1	277.155
	CNS0095611	Silvery flower (tetraploid) 2	541.023
	CNS0095612	Silvery flower (tetraploid) 3	100.779
	CNS0095613	Golden flower (tetraploid) 1	61.671
	CNS0095614	Golden flower (tetraploid) 2	238.635
	CNS0095615	Golden flower (tetraploid) 3	58.101
CRA001975	CRR073297	Stem 1	449.652
	CRR073298	Stem 2	358.850
	CRR073299	Stem 3	637.159
	CRR073300	Leaf 1	79.435
	CRR073301	Leaf 2	119.477
	CRR073302	Leaf 3	106.228
	CRR073303	Juvenile bud 1	72.516
	CRR073304	Juvenile bud 2	60.951
	CRR073305	Juvenile bud 3	116.732
	CRR073306	Third green 1	6.655
	CRR073307	Third green 2	7.445
	CRR073308	Third green 3	16.552
	CRR073309	Second white 1	36.635
	CRR073310	Second white 2	16.380
	CRR073311	Second white 3	14.273
	CRR073312	Silver flowering 1	15.381
	CRR073313	Silver flowering 2	25.046
	CRR073314	Silver flowering 3	18.922
	CRR073315	Gold flowering 1	2633.014
	CRR073316	Gold flowering 2	2637.645
	CRR073317	Gold flowering 3	3397.733
	CRR073318	Tawny withering 1	575.242
	CRR073319	Tawny withering 2	448.796
	CRR073320	Tawny withering 3	489.358