Gene detail

Detail information of GWHGAAZE024356

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004304964.1	0	PREDICTED: ABC transporter B family member 15-like [Fragaria vesca subsp. vesca]
COG	YP_005367043.1	2E-110	efflux ABC transporter permease/ATP-binding protein
Swissprot	tr\|Q9LHD1\|AB15B_ARATH	0	ABC transporter B family member 15
trEMBL	tr\|M5XBG4\|M5XBG4_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ18853.1}
TAIR10	AT3G28345.1	0	ABC transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40603871	40611674	-
GWHAAZE00000007	mRNA	40603871	40611674	-
GWHAAZE00000007	exon	40603871	40604074	-
GWHAAZE00000007	exon	40604357	40605371	-
GWHAAZE00000007	exon	40605454	40605523	-
GWHAAZE00000007	exon	40605980	40606057	-
GWHAAZE00000007	exon	40606230	40606661	-
GWHAAZE00000007	exon	40606926	40607325	-
GWHAAZE00000007	exon	40607609	40608149	-
GWHAAZE00000007	exon	40608598	40609055	-
GWHAAZE00000007	exon	40610536	40610714	-
GWHAAZE00000007	exon	40610839	40610893	-
GWHAAZE00000007	exon	40611504	40611674	-
GWHAAZE00000007	CDS	40611504	40611674	-
GWHAAZE00000007	CDS	40610839	40610893	-
GWHAAZE00000007	CDS	40610536	40610714	-
GWHAAZE00000007	CDS	40608598	40609055	-
GWHAAZE00000007	CDS	40607609	40608149	-
GWHAAZE00000007	CDS	40606926	40607325	-
GWHAAZE00000007	CDS	40606230	40606661	-
GWHAAZE00000007	CDS	40605980	40606057	-
GWHAAZE00000007	CDS	40605454	40605523	-
GWHAAZE00000007	CDS	40604357	40605371	-
GWHAAZE00000007	CDS	40603871	40604074	-

Transcript Sequence
>GWHTAAZE024390 ATGCATGCTGATGGTGCTGATTTGTTGTTGATGACTCTAGGCTTTATCGGAGCCATCGGCGATGGTGCTTTAACGCCGGTATTGTTGATTGTCACCAGCAAGCTCATGAACAATCTTGGCGGCTCTAATTCCACTTCAACTGTACATGATTTCACTCAAAAAATCAACAAGAATGCAGTGATTCTTTGTTACATGGCATCTGCACAATTTGCGGCTTCTTTCCTTGAGGGGTATTGTTGGACAAGAACAGCAGAAAGACAAGCTTCAAGATTAAGGGTTAGGTACTTGAAGGCTGTGCTTAGACAAGATGTGGGCTACTTTGATCTTCATGTTTCTAGCACCTCTGAAGTTATCACAAGTGTCTCTAGTGATAGTCTTGTTATTCAAGATGTTATTGCTGAAAAGGTGCCTGTGTTCGTTATGTATGCATCAACTTTCATTGGGTCATATGTAGTGGCATTCATGTTGATATGGAAGCTAGCCATTTTGGGTTTTCCATTCATGGTTCTTCTTGCCATCCCGGGCTTAATGTATGGAAGGGCGCTAATAGGCATTGCCAGAAAGATGAAGGACGAGTACAGTAAGGCCGACGCAATAGCAGAACAGGCAATATCTTCGGTAAGAACAATTTATTCCTTTGTACAAGAAAGCAGAATCATAGCCGAGTACTCAAAATCCCTCGAAGGGACCGTAAAACTGGGACTTAGTCAAGGCTTAGCCAAAGGCATGGCTGTTGGTAGCACTGGCATAGTCTTTGCTATATGGTCCTTCATGTCTTATTTTGGTAGCAGAATGGTGATGTACCATGGTGCTCATGGTGGTACTATTTTTGGAGTTGGTGGCGCTGTTGTTCTTGGTGGATTAGCATTGGGTTCCGGATTGTCCAACTTGAAGTACTTCTTCGAAGCAGTGGCAGCAGGCGAACGCATAATGGAGATCATAAAAAGAGTACCAAAGATTGATTCCGAAAACATGGATGGACAAATTATACAGAACATTAAAGGGGAAGTTGAATTCAGACACATCGAATTCGCCTACCCATCGAGACCCGAAACCTTAATCTTTAAGGACTTTAACCTCAAAGTTCCAGCAGGACTAACGGTGGCATTGGTTGGAGGAAGTGGGTCCGGTAAGTCAACGGTTATAGCTTTATTGCAGAGATTTTATGACCCAATTGGTGGAGAGATAGTTCTTGATGGAGTGGGAATTGATAAGCTTCAGTTGAAGTGGGTGAGGTCTCAAATGGGGTTGGTTAGTCAAGAACCAGCACTATTTGCAACCACAATCAAAGAGAATATACTGTTTGGGAAAGAAGATGGTACAATGGAAGAGGTTATTGAGGCTGCTAAAGCTTCTAATGCTCATAATTTCATCACTCAGTTGCCTCAGGGTTATGATACCCAGGTAGGTGAAAGAGGCGTTCAAATTTCAGGAGGACAGAAGCAGAGAATCGCAATTGCGCGAGCCATAATCAAGGCACCTACCATCCTCCTCCTTGACGAGGCAACTAGTGCACTAGACTCAGAATCAGAACGTGTTGTCCAAGAAGCTCTTGACAAGGCCGTTCTGGGCCGCACCACCATCGTCATTGCCCACCGCCTCTCCACGATAAAAAACGCCAGTGTCATTGGTGTTATACAAAATGGACAAATCACAGAGATCGGCTCACACAACATGCTTATCCAGAACGAAAATGGCCTATACACATCACTTGTCCGCCACCAACAATCCGAAAAAAATGAAAAAGAACCAATTTCAGTATCAAATGATATTGCTAAAACCTCATCATCCATTACAAACATCGAAGAAGATGCTACATTTCTGGATGACCAAGATTTTCCAGTACCTTCCTTTCGACAGCTTCTAGCAATGAATCTTCCAGAATGGAGGCAAGCGGCAATTGGATGTTTGAGTGCAGTTCTATTTGGTGCAGTTCAACCAATGTACGGATTTTCATTGGGGGCTGTGATATCGGTATATTTCTTGCCAGACCATAATGAGATCAAGGCGAAGATAAGGATGTACTGTTTCTTGTTTGTTGGATTGGCCGTTTTCTCACTTTTGAACAATATGTGTCAGCATTACAATTTTGCTGTTATGGGAGAGTACTTGACGAAGAGGATCAGAGAGAAAATGTTATCGAAGATTCTCACTTTTGAAATTGGGTGGTTTGATCGGAGTGAGAATAGTAGTAGCATTGTCTGCTCAAGAATCGCCAAAGATGCCAATATGGTAGTTATTGATGTATTGGCATTGCTTTATGGACTTCAAGTTTTGGCTCCTAGTCCAAAAGACAATCCACTTCACTTTTTTTGTGAGAGCTTTGGTGGGCGATCGAATGTCACTCCTTATACAAACATGTTCAGCAGTAATCATCGCTTGCAACGCGTTCTTTTGAAAAACACATCTCAGAAGGCCATCAAATCCCAAGATGAAACCAGCAAAATTGCAGCTGAAGCCGTCTCTAACCTTAAAACAATCACTGCCTTTTCATCTCAAAACCGAATCCTTAAAATGCTTGAACAAGCCCAAAAAGGTCCGCAAAAAGAGAGTATTCGACAATCATGGTTGGCGGGTATTGGACTAGGAACCTCACAAAGCCTAATGACATTCTCTTGGGCATTGGACTTTTGGTATGGTGCTAAACTTGTGACTGGTGGCTATATGGGAGTGAAAGATTTTTTTACAACTTTCATGGTCTTAGCAAGCACCGGTCGAGCCATTGCTGAGGCCGGCACTATGACTAGTGACCTAGCCAAAGGTTCAAATGCGGTCAAGTCAGTTTTTTCTGTTCTGGACCGGGTTACATTAATTGACCCTGAGGACCCAAGAGGTTATCGTTCCGATAAGTTAATGGGTTGTGTAGAGCTCAATGACATTCATTTTGCGTATCCGTCTAGGCCTGGAATGATGATCTTTAAAGGGTTTTCGATCCGTATTGAAGCAGGGAAATCAACAGCATTGGTGGGACAAAGTGGGTCAGGAAAATCGACGGTAATAAGCCTAATCCAGAGATTCTATGACCCACTTAAGGGTGTAGTACAAATCGACAGCAGAGATATAAGGTCTTACTGCCTTAGTTCACTGAGGAAACACATTGCGTTGGTTAGCCAAGAGCCTACATTGTTTGGTGGGACCATACGCGAAAACATTATGTATGGAAATTCTGTTCATAAACCTATTGAAGCAGAGATTGTGGAGGCTGCTAAGGCAGCCAACGCTCATGATTTCATTTCCGGATTGAAGGATGGATATGATACATTTTGCGGGGACAGAGGAACGCAGCTGTCTGGCGGTCAGAAGCAACGAATTGCAATAGCACGCGCTATACTGAAAAACGCACCAGTGTTATTGTTAGATGAGGCCACCAGTGCACTCGACAGTCAGTCGGAAAAGATGGTGCAAGATGCGCTTGAGCGCATAATGGTGGGAAGGACTAGCGTGATCGTGGCACATCGACTAAGTTCCATACAAAACTGTGACACAATCGCTGTTTTGGACAAAGGAAAGGTAGTGGAAATGGGCAACCATTCATCATTACTAGCTAAAGGGTCCATTGGAATCTACTACTCACTTGTTAACCTTCAAAGAACAGTTAATTAA

Network for GWHGAAZE024356

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	11	269	2.70E-44
PF00005.28	ABC_tran	356	504	1.10E-31
PF00664.24	ABC_membrane	634	745	5.20E-14
PF00664.24	ABC_membrane	799	900	2.80E-14
PF00005.28	ABC_tran	974	1124	2.30E-33

Protein Sequence

>GWHPAAZE024374
MHADGADLLLMTLGFIGAIGDGALTPVLLIVTSKLMNNLGGSNSTSTVHDFTQKINKNAVILCYMASAQFAASFLEGYCWTRTAERQASRLRVRYLKAVLRQDVGYFDLHVSSTSEVITSVSSDSLVIQDVIAEKVPVFVMYASTFIGSYVVAFMLIWKLAILGFPFMVLLAIPGLMYGRALIGIARKMKDEYSKADAIAEQAISSVRTIYSFVQESRIIAEYSKSLEGTVKLGLSQGLAKGMAVGSTGIVFAIWSFMSYFGSRMVMYHGAHGGTIFGVGGAVVLGGLALGSGLSNLKYFFEAVAAGERIMEIIKRVPKIDSENMDGQIIQNIKGEVEFRHIEFAYPSRPETLIFKDFNLKVPAGLTVALVGGSGSGKSTVIALLQRFYDPIGGEIVLDGVGIDKLQLKWVRSQMGLVSQEPALFATTIKENILFGKEDGTMEEVIEAAKASNAHNFITQLPQGYDTQVGERGVQISGGQKQRIAIARAIIKAPTILLLDEATSALDSESERVVQEALDKAVLGRTTIVIAHRLSTIKNASVIGVIQNGQITEIGSHNMLIQNENGLYTSLVRHQQSEKNEKEPISVSNDIAKTSSSITNIEEDATFLDDQDFPVPSFRQLLAMNLPEWRQAAIGCLSAVLFGAVQPMYGFSLGAVISVYFLPDHNEIKAKIRMYCFLFVGLAVFSLLNNMCQHYNFAVMGEYLTKRIREKMLSKILTFEIGWFDRSENSSSIVCSRIAKDANMVVIDVLALLYGLQVLAPSPKDNPLHFFCESFGGRSNVTPYTNMFSSNHRLQRVLLKNTSQKAIKSQDETSKIAAEAVSNLKTITAFSSQNRILKMLEQAQKGPQKESIRQSWLAGIGLGTSQSLMTFSWALDFWYGAKLVTGGYMGVKDFFTTFMVLASTGRAIAEAGTMTSDLAKGSNAVKSVFSVLDRVTLIDPEDPRGYRSDKLMGCVELNDIHFAYPSRPGMMIFKGFSIRIEAGKSTALVGQSGSGKSTVISLIQRFYDPLKGVVQIDSRDIRSYCLSSLRKHIALVSQEPTLFGGTIRENIMYGNSVHKPIEAEIVEAAKAANAHDFISGLKDGYDTFCGDRGTQLSGGQKQRIAIARAILKNAPVLLLDEATSALDSQSEKMVQDALERIMVGRTSVIVAHRLSSIQNCDTIAVLDKGKVVEMGNHSSLLAKGSIGIYYSLVNLQRTVN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.103
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.039
	SRR3591708	Shoot apex	0.061
	SRR3591709	Stem	0.812
	SRR3591710	White floral bud	1.711
	SRR3591711	White flower	0.479
	SRR3591712	Green floral bud	1.783
	SRR3591713	Yellow flower	0.103
SRP173429	SRR8316895	Juvenile bud stage	0.813
	SRR8316896	Juvenile bud stage	1.821
	SRR8316897	Juvenile bud stage	1.210
	SRR8316894	Third green stage	0.927
	SRR8316900	Third green stage	1.316
	SRR8316901	Third green stage	2.052
	SRR8316898	Complete white stage	0.001
	SRR8316899	Complete white stage	0.095
	SRR8316903	Complete white stage	0.024
	SRR8316902	Silver flowering stage	0.060
	SRR8316904	Silver flowering stage	0.071
	SRR8316905	Silver flowering stage	0.019
	SRR8316906	Gold flowering stage	0.134
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.089
SRP132670	SRR6706286	Control	0.535
	SRR6706287	Light intensity 50%	0.592
	SRR6706288	Light intensity 20%	0.465
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.282
	CNS0095593	Slightly white alabastrum(diploid) 2	1.239
	CNS0095594	Slightly white alabastrum(diploid) 3	2.126
	CNS0095595	Whole white alabastrum(diploid) 2	4.202
	CNS0095596	Whole white alabastrum(diploid) 3	4.692
	CNS0095597	Whole white alabastrum(diploid) 4	4.893
	CNS0095598	Silvery flower (diploied) 1	0.171
	CNS0095599	Silvery flower (diploied) 2	0.333
	CNS0095600	Silvery flower (diploied) 3	0.072
	CNS0095601	Golden flower (diploid) 1	0.067
	CNS0095602	Golden flower (diploid) 2	0.111
	CNS0095603	Golden flower (diploid) 3	0.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.188
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.317
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.245
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.865
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.582
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.175
	CNS0095610	Silvery flower (tetraploid) 1	0.016
	CNS0095611	Silvery flower (tetraploid) 2	0.183
	CNS0095612	Silvery flower (tetraploid) 3	0.523
	CNS0095613	Golden flower (tetraploid) 1	0.022
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.201
CRA001975	CRR073297	Stem 1	0.647
	CRR073298	Stem 2	0.488
	CRR073299	Stem 3	0.226
	CRR073300	Leaf 1	0.844
	CRR073301	Leaf 2	0.592
	CRR073302	Leaf 3	0.251
	CRR073303	Juvenile bud 1	0.519
	CRR073304	Juvenile bud 2	0.099
	CRR073305	Juvenile bud 3	0.152
	CRR073306	Third green 1	0.049
	CRR073307	Third green 2	0.154
	CRR073308	Third green 3	0.118
	CRR073309	Second white 1	0.002
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.068
	CRR073313	Silver flowering 2	0.057
	CRR073314	Silver flowering 3	0.269
	CRR073315	Gold flowering 1	0.040
	CRR073316	Gold flowering 2	0.020
	CRR073317	Gold flowering 3	0.105
	CRR073318	Tawny withering 1	2.137
	CRR073319	Tawny withering 2	2.716
	CRR073320	Tawny withering 3	1.096