Gene detail

Detail information of GWHGAAZE024351

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006338500.1	0	PREDICTED: ABC transporter B family member 15-like [Solanum tuberosum]
COG	YP_005367043.1	2E-110	efflux ABC transporter permease/ATP-binding protein
Swissprot	tr\|Q9LHD1\|AB15B_ARATH	0	ABC transporter B family member 15
trEMBL	tr\|M0ZLW2\|M0ZLW2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400003546}
TAIR10	AT3G28345.1	0	ABC transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40522523	40529335	+
GWHAAZE00000007	mRNA	40522523	40529335	+
GWHAAZE00000007	exon	40522523	40522755	+
GWHAAZE00000007	exon	40522929	40522987	+
GWHAAZE00000007	exon	40523076	40523254	+
GWHAAZE00000007	exon	40523477	40523934	+
GWHAAZE00000007	exon	40524897	40525437	+
GWHAAZE00000007	exon	40526957	40527401	+
GWHAAZE00000007	exon	40527500	40527666	+
GWHAAZE00000007	exon	40527795	40527848	+
GWHAAZE00000007	exon	40527947	40529335	+
GWHAAZE00000007	CDS	40522523	40522755	+
GWHAAZE00000007	CDS	40522929	40522987	+
GWHAAZE00000007	CDS	40523076	40523254	+
GWHAAZE00000007	CDS	40523477	40523934	+
GWHAAZE00000007	CDS	40524897	40525437	+
GWHAAZE00000007	CDS	40526957	40527401	+
GWHAAZE00000007	CDS	40527500	40527666	+
GWHAAZE00000007	CDS	40527795	40527848	+
GWHAAZE00000007	CDS	40527947	40529335	+

Transcript Sequence
>GWHTAAZE024385 ATGAATGGGTCAATTAGATCCATTTTCATGCACGCGGACGGTGCTGATTTGTTGTTGATGCTTTTCGGCTTCATCGGAGCCATGGGTGATGGGATTTCCATGCCGGCGATGTTGATTGTCACTAGCAAGCTCATGAACAATCTTGGTGGTTCCGCTAACTCTGATAATTTCACTCATAACATCAACAAGGTCATGTATATATCCATGTTGTTTGTACATGTATCTGTATATATAATGCCCTTCTTCTCTGTTACATGGCTTGTGCGCAATGGTTGGCTTGTTTTCTTGGTAGAGGGATATTGCTGGGCAAGAACAGCAGAAAGACAAGCTTCAAGATTGAGAGTAAGATATTTGAAAGCTGTCCTAAGACAAGACGTGGGCTATTTTGATCTTCATGTTACCAGCACCGCAGAAGTAATCACAAGCGTCTCCAGCGATAGCCTCGTAATTCAAGATGTTATTAGTGAAAAAGTGCCTGTCTTCGTTATGAACGTGTCAACTTTCCTCGGATCATACATAGTGGCATTCATAATGCTGTGGAGGTTAGCTATTGTCGGGTTTCCATTCGTTGTACTTCTTGTCATACCGGGCCTAATGTACGGCAGGGCGCTAATAGGCATAGCCAGAAAAATGAGAGATGAGTACAGCAAAGCCGGTACAATAGTAGAGCAGGCTATTTCGTCTGTGAGAACAGTTTATTCCTTTGTAGGGGAAAGCAAAACTATATCATCTTATTCTGCTGCTCTGGAAGGAACCGTAAAATTGGGACTTACACAAGGCCTAGCCAAAGGCTTGGCCATTGGTAGTAATGGTGTCGTTTTCGCTATATGGTCTTTTATGTCGTACTATGGTAGCAGAATGGTGATGTACCACGGGGCTCATGGTGGCACTGTCTTTGCTGTTGGTGCTGCTATAGCTATCGGTGGATTAGCATTGGGTTCTGGATTATCCAACTTGAAGTACTTCTTCGAAGCAGCGGCAGCAGGCGAACGCATAATGGAGATCATAAAAAGAGTACCAAAGATCGATTCCGAAAACATGGATGGACAAATTATACAGAACATTAAAGGGGAAGTCGAATTCAGACACATCAAATTCGCCTACCCATCGAGGCCCGAAACCTTAATATTTAAGGACTTTGACCTCAAGGTTCCAGCAGGACTAACGGTGGCATTGGTCGGAGGAAGTGGGTCCGGAAAGTCGACGGTTATAGCTTTATTGCAGAGATTTTATGACCCAATTGGTGGCGAGATAGTTCTTGATGGAGTGGGAATCGATAAGCTTCAGTTGAAGTGGGTGAGGTCTCAAATGGGGTTGGTTAGTCAAGAACCAGCACTATTTGCAACCACAATCAAAGAGAATATACTGTTTGGGAAAGAAGATGGCACAATGGAAGAGGTTATTGAGGCTGCTAAAGCTTCTAATGCTCATAATTTCATCACTCAGTTGCCTCAAGGTTATGATACTCAGGTAGGTGAGAGAGGAGTTCAAATGTCTGGTGGACAAAAGCAGAGAATTGCAATTGCAAGAGCTATAATAAAGGCACCTCAAATACTTCTACTAGATGAAGCAACCAGTGCACTAGACTCAGAATCAGAAAGAGTAGTACAAGAAGCATTAGACAAAGCAGTCGTGGGAAGAACCACCATCATTATCGCCCATCGCCTCTCCACCATTAGGAATGCCGACATTATAGCTGTGGTCCAAAACGGCCAAGTCATGGAGACTGGGTCACACCAAGAACTCATAGAAGACGAAAATGGCCTGTACACTTCACTTGTCAGCCTCCAACAGTCTGATGAAAATGTAGAATCACCTGCTGCTACTCCTACAATTATATCAAACCTTAATGATACGCATAATACAAGTAGTCGTAGATTGTCAATGGTGAGTCGGTCCAGCTCAGCAAACTCCGAATGGAGGCAAGCAACAGTGGGGTCTGTGAGTGCGGTTTTGTTTGGTGCAGTTCAACCACTGTATGCATTCGCACTTGGGTCAATGATATCGGTCTATTTCTTGCCAGATCATAATGAGATAAAGGAAAAGACGAGGACTTATGCTTTATGTTTTGTTGGACTGGCGGATGAGAATGCTAGTGGCGCTATTTGCTCTCGACTTGCCAAAGATGCCAATGTGGTGAGATCTTTAGTAGGTGATCGAATGGCGCTTCTTATCCAAACTGCCTCGGCAGTAACCATTGCTTGCACTATGGGCTTAATCCTTGCATGGAAGCTAGCATTGGTCATGATCGCAGTGCAACCTATTATCATTGTTTGTTATTATTGCAAGCGTGTCTTACTAAAAAACATGTCACAGAAAGCCATCAAATCCCAAGATGAAAGTAGTAAGCTCGCAGCCGAAGCGGTCTCCAACCTTCGAACAGTCACCGCGTTCTCTTCCCAAGCACGTATCCTTCAAATGCTCGACCAAGCCCAGGAAGGTCCCCAGCGAGAAAGTATTCGACAAGCATGGTTTGCAGGAATTGGGCTTGGAACTTCCCAAAGCCTAATGGCATGCACTTGGGCACTTGACTTTTGGTATGGCGGGAAACTCATGGCTGACGGTTACATCGGTGCAAAAGCACTTTTCGAGACGTTTATGATATTAGTAAGTACAGGTCGTGTCATTGCTGACGCTGGTACCATGACTAATGACCTCGCCAAAGGTTCAGATGCAATCGGCTCAGTTTTTGCAGTTTTGGATCGATACACCTCAATCGAACCAGAAGATCCTGAAAGTTACCAGCCTGATAAGATATTGGGCAACATAGAGCTCCACAACATTGACTTTGCGTACCCGAGCCGGCCAAATGTGATGATATTTAGAGGATTTTCGATCAGTATCCAAGCAGGGAAGTCAACGGCATTGGTGGGACAGAGCGGATCAGGAAAGTCAACTATAATCGGGCTGATAGAGAGATTCTATGATCCGATCAAAGGTGTAGTGAAAATCGATGATAGAGATATAAGGTCGTACCATCTCAGATTTCTCAGAAAGCACATAGCGTTAGTTAGTCAAGAGCCTACATTATTTGGGGGGACCATACGCGAAAACATCACATATGGAGCGTCCGATGAAGTGGATGAAACAGAGATCATTGAGGCGGCCAAGGCAGCCAACGCTCACGATTTCATCGCGGGGTTGAAAGACGGGTTCAATACATGGTGCGGGGACAGGGGATTACAGCTCTCTGGTGGTCAAAAGCAACGTATAGCAATAGCGCGTGCAATACTGAAAAATCCCACAATTTTGTTGCTGGATGAAGCTACGAGCGCACTTGATAGTCAATCGGAGAAGGTGGTGCAAGACGCGCTCGAGCGCGTGATGGTGGGGAGAACTAGTGTGGTGGTAGCCCACAGATTGAGTACTATACAAAATTGTGACACAATTGCGGTGCTTGATAGAGGGAAAGTTGTTGAAAGAGGGACCCACTCATCACTGCTGGCCAAAGGGCCCAGCGGCACGTACTATTCACTCGTTAGCCTTCAAAGAACACCAAATAATCATAACCGTAGAATCACTTGA

Network for GWHGAAZE024351

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	20	300	7.50E-39
PF00005.28	ABC_tran	378	526	4.10E-32
PF00664.24	ABC_membrane	695	869	1.20E-30
PF00005.28	ABC_tran	943	1091	1.50E-33

Protein Sequence

>GWHPAAZE024369
MNGSIRSIFMHADGADLLLMLFGFIGAMGDGISMPAMLIVTSKLMNNLGGSANSDNFTHNINKVMYISMLFVHVSVYIMPFFSVTWLVRNGWLVFLVEGYCWARTAERQASRLRVRYLKAVLRQDVGYFDLHVTSTAEVITSVSSDSLVIQDVISEKVPVFVMNVSTFLGSYIVAFIMLWRLAIVGFPFVVLLVIPGLMYGRALIGIARKMRDEYSKAGTIVEQAISSVRTVYSFVGESKTISSYSAALEGTVKLGLTQGLAKGLAIGSNGVVFAIWSFMSYYGSRMVMYHGAHGGTVFAVGAAIAIGGLALGSGLSNLKYFFEAAAAGERIMEIIKRVPKIDSENMDGQIIQNIKGEVEFRHIKFAYPSRPETLIFKDFDLKVPAGLTVALVGGSGSGKSTVIALLQRFYDPIGGEIVLDGVGIDKLQLKWVRSQMGLVSQEPALFATTIKENILFGKEDGTMEEVIEAAKASNAHNFITQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKAPQILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADIIAVVQNGQVMETGSHQELIEDENGLYTSLVSLQQSDENVESPAATPTIISNLNDTHNTSSRRLSMVSRSSSANSEWRQATVGSVSAVLFGAVQPLYAFALGSMISVYFLPDHNEIKEKTRTYALCFVGLADENASGAICSRLAKDANVVRSLVGDRMALLIQTASAVTIACTMGLILAWKLALVMIAVQPIIIVCYYCKRVLLKNMSQKAIKSQDESSKLAAEAVSNLRTVTAFSSQARILQMLDQAQEGPQRESIRQAWFAGIGLGTSQSLMACTWALDFWYGGKLMADGYIGAKALFETFMILVSTGRVIADAGTMTNDLAKGSDAIGSVFAVLDRYTSIEPEDPESYQPDKILGNIELHNIDFAYPSRPNVMIFRGFSISIQAGKSTALVGQSGSGKSTIIGLIERFYDPIKGVVKIDDRDIRSYHLRFLRKHIALVSQEPTLFGGTIRENITYGASDEVDETEIIEAAKAANAHDFIAGLKDGFNTWCGDRGLQLSGGQKQRIAIARAILKNPTILLLDEATSALDSQSEKVVQDALERVMVGRTSVVVAHRLSTIQNCDTIAVLDRGKVVERGTHSSLLAKGPSGTYYSLVSLQRTPNNHNRRIT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.843
	SRR3591706	second leaf	2.790
	SRR3591707	mature leaf	1.789
	SRR3591708	Shoot apex	9.757
	SRR3591709	Stem	20.520
	SRR3591710	White floral bud	0.493
	SRR3591711	White flower	1.097
	SRR3591712	Green floral bud	0.496
	SRR3591713	Yellow flower	0.195
SRP173429	SRR8316895	Juvenile bud stage	0.932
	SRR8316896	Juvenile bud stage	0.595
	SRR8316897	Juvenile bud stage	0.368
	SRR8316894	Third green stage	0.195
	SRR8316900	Third green stage	0.127
	SRR8316901	Third green stage	0.051
	SRR8316898	Complete white stage	0.062
	SRR8316899	Complete white stage	0.278
	SRR8316903	Complete white stage	0.166
	SRR8316902	Silver flowering stage	0.107
	SRR8316904	Silver flowering stage	0.287
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	0.099
	SRR8316907	Gold flowering stage	0.454
	SRR8316908	Gold flowering stage	0.849
SRP132670	SRR6706286	Control	0.140
	SRR6706287	Light intensity 50%	0.134
	SRR6706288	Light intensity 20%	0.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.755
	CNS0095593	Slightly white alabastrum(diploid) 2	0.634
	CNS0095594	Slightly white alabastrum(diploid) 3	0.930
	CNS0095595	Whole white alabastrum(diploid) 2	0.474
	CNS0095596	Whole white alabastrum(diploid) 3	0.170
	CNS0095597	Whole white alabastrum(diploid) 4	0.279
	CNS0095598	Silvery flower (diploied) 1	0.535
	CNS0095599	Silvery flower (diploied) 2	0.432
	CNS0095600	Silvery flower (diploied) 3	0.359
	CNS0095601	Golden flower (diploid) 1	0.319
	CNS0095602	Golden flower (diploid) 2	0.236
	CNS0095603	Golden flower (diploid) 3	0.265
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.271
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.404
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.188
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.302
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.061
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.027
	CNS0095610	Silvery flower (tetraploid) 1	0.338
	CNS0095611	Silvery flower (tetraploid) 2	0.094
	CNS0095612	Silvery flower (tetraploid) 3	0.585
	CNS0095613	Golden flower (tetraploid) 1	0.521
	CNS0095614	Golden flower (tetraploid) 2	0.362
	CNS0095615	Golden flower (tetraploid) 3	0.173
CRA001975	CRR073297	Stem 1	0.986
	CRR073298	Stem 2	1.079
	CRR073299	Stem 3	2.699
	CRR073300	Leaf 1	0.194
	CRR073301	Leaf 2	0.158
	CRR073302	Leaf 3	0.259
	CRR073303	Juvenile bud 1	0.164
	CRR073304	Juvenile bud 2	0.052
	CRR073305	Juvenile bud 3	0.091
	CRR073306	Third green 1	0.039
	CRR073307	Third green 2	0.190
	CRR073308	Third green 3	0.101
	CRR073309	Second white 1	0.068
	CRR073310	Second white 2	0.112
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.123
	CRR073313	Silver flowering 2	0.280
	CRR073314	Silver flowering 3	0.164
	CRR073315	Gold flowering 1	1.475
	CRR073316	Gold flowering 2	2.801
	CRR073317	Gold flowering 3	2.515
	CRR073318	Tawny withering 1	5.821
	CRR073319	Tawny withering 2	5.967
	CRR073320	Tawny withering 3	4.398