Gene detail

Detail information of GWHGAAZE024333

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006338484.1	2.14711E-72	PREDICTED: thioredoxin H2-like [Solanum tuberosum]
COG	YP_254764.1	2E-21	thioredoxin
Swissprot	tr\|Q38879\|TRXH2_ARATH	9E-62	Thioredoxin H2
trEMBL	tr\|M0ZLX3\|M0ZLX3_SOLTU	8E-73	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400003564}
TAIR10	AT5G39950.1	5E-49	thioredoxin 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	40168950	40171693	+
GWHAAZE00000007	mRNA	40168950	40171693	+
GWHAAZE00000007	exon	40168950	40169096	+
GWHAAZE00000007	exon	40169559	40169681	+
GWHAAZE00000007	exon	40171388	40171693	+
GWHAAZE00000007	CDS	40168950	40169096	+
GWHAAZE00000007	CDS	40169559	40169681	+
GWHAAZE00000007	CDS	40171388	40171537	+
GWHAAZE00000007	three_prime_UTR	40171538	40171693	+

Transcript Sequence
>GWHTAAZE024367 ATGGGAGCGATTCTTTCTTCTCTATTCGGAGGAGGATCTACTGCCGACACCGAACAATCATCATCAGAACCATCTCGAGTGATGGAATTTCACTCCTCAAACAGATGGCAACTCCACTTCAACTCTTCCAAACAATCCCCTAAACTGATTGTGGTGGATTTCTCGGCAACATGGTGTGGGCCCTGCAGGTTCATGGAGCCGGCTGTACAAGCCATGGCTTCCAAGTATGCAAACGTTGAATTTGTGAAGCTTGATGTTGATGAATTGTCGGATGTGGCACAGGAGTTTGCGGTGCAGGCAATGCCGACATTTGTGTTGCTAAAACAAGGGAAAGAAGTGGAGAGGGTGGTTGGTGCCAAAAAGGATGATCTTGAGAAGATGGTTGTCAAGCACCGGGAAATGCCCAAATTTGCTGCTTGATACACTTACAAAATTTGGATACATTTATAAATTATGCAGCTTGAACAAAAACCTACTGTGATCATTGTGATGGAGACATTTATTGTTCATTCTTGAAATCTTGGTGTGCTTTGTTTACTATTCAGGTATGTATGAACTGGGATTTCACTTTGTTCA

Network for GWHGAAZE024333

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	44	128	1.20E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03671	trxA	NOD-like receptor signaling pathway	map04621

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis
GO:0006662	biological_process	glycerol ether metabolic process
GO:0015035	molecular_function	protein disulfide oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	200.326
	SRR3591706	second leaf	117.887
	SRR3591707	mature leaf	103.974
	SRR3591708	Shoot apex	192.383
	SRR3591709	Stem	192.238
	SRR3591710	White floral bud	133.741
	SRR3591711	White flower	129.958
	SRR3591712	Green floral bud	154.169
	SRR3591713	Yellow flower	109.339
SRP173429	SRR8316895	Juvenile bud stage	62.602
	SRR8316896	Juvenile bud stage	71.836
	SRR8316897	Juvenile bud stage	38.638
	SRR8316894	Third green stage	27.166
	SRR8316900	Third green stage	102.507
	SRR8316901	Third green stage	90.740
	SRR8316898	Complete white stage	36.405
	SRR8316899	Complete white stage	129.863
	SRR8316903	Complete white stage	54.398
	SRR8316902	Silver flowering stage	59.224
	SRR8316904	Silver flowering stage	56.601
	SRR8316905	Silver flowering stage	35.301
	SRR8316906	Gold flowering stage	110.043
	SRR8316907	Gold flowering stage	100.981
	SRR8316908	Gold flowering stage	110.239
SRP132670	SRR6706286	Control	79.341
	SRR6706287	Light intensity 50%	73.638
	SRR6706288	Light intensity 20%	87.193
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	118.802
	CNS0095593	Slightly white alabastrum(diploid) 2	154.826
	CNS0095594	Slightly white alabastrum(diploid) 3	133.258
	CNS0095595	Whole white alabastrum(diploid) 2	123.913
	CNS0095596	Whole white alabastrum(diploid) 3	125.164
	CNS0095597	Whole white alabastrum(diploid) 4	109.919
	CNS0095598	Silvery flower (diploied) 1	102.677
	CNS0095599	Silvery flower (diploied) 2	116.963
	CNS0095600	Silvery flower (diploied) 3	104.115
	CNS0095601	Golden flower (diploid) 1	104.247
	CNS0095602	Golden flower (diploid) 2	96.119
	CNS0095603	Golden flower (diploid) 3	88.808
	CNS0095604	Slightly white alabastrum(tetraploid) 1	126.874
	CNS0095605	Slightly white alabastrum(tetraploid) 2	130.972
	CNS0095606	Slightly white alabastrum(tetraploid) 3	181.627
	CNS0095607	Whole white alabastrum(tetraploid) 1	98.791
	CNS0095608	Whole white alabastrum(tetraploid) 2	93.976
	CNS0095609	Whole white alabastrum(tetraploid) 3	108.537
	CNS0095610	Silvery flower (tetraploid) 1	101.725
	CNS0095611	Silvery flower (tetraploid) 2	99.152
	CNS0095612	Silvery flower (tetraploid) 3	90.590
	CNS0095613	Golden flower (tetraploid) 1	75.003
	CNS0095614	Golden flower (tetraploid) 2	88.492
	CNS0095615	Golden flower (tetraploid) 3	64.012
CRA001975	CRR073297	Stem 1	101.984
	CRR073298	Stem 2	102.564
	CRR073299	Stem 3	150.389
	CRR073300	Leaf 1	123.444
	CRR073301	Leaf 2	142.002
	CRR073302	Leaf 3	220.269
	CRR073303	Juvenile bud 1	147.002
	CRR073304	Juvenile bud 2	141.746
	CRR073305	Juvenile bud 3	89.973
	CRR073306	Third green 1	98.422
	CRR073307	Third green 2	162.851
	CRR073308	Third green 3	99.560
	CRR073309	Second white 1	143.753
	CRR073310	Second white 2	112.326
	CRR073311	Second white 3	55.344
	CRR073312	Silver flowering 1	79.078
	CRR073313	Silver flowering 2	127.468
	CRR073314	Silver flowering 3	53.230
	CRR073315	Gold flowering 1	177.742
	CRR073316	Gold flowering 2	153.480
	CRR073317	Gold flowering 3	156.935
	CRR073318	Tawny withering 1	206.977
	CRR073319	Tawny withering 2	225.934
	CRR073320	Tawny withering 3	192.340