Detail information of GWHGAAZE024328


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009630103.10PREDICTED: protein CLP1 homolog {ECO:0000255|HAMAP-Rule:MF_03035} [Nicotiana tomentosiformis]
COGYP_001013795.15E-13hypothetical protein Hbut_1636
Swissprottr|Q9SR06|CLP1_ARATH0Protein CLP1 homolog {ECO:0000255|HAMAP-Rule:MF_03035}
trEMBLtr|M1CYZ7|M1CYZ7_SOLTU0Protein CLP1 homolog {ECO:0000256|HAMAP-Rule:MF_03035}
TAIR10AT3G04680.20CLP-similar protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4011698540122509-
GWHAAZE00000007mRNA4011698540122509-
GWHAAZE00000007exon4012224140122509-
GWHAAZE00000007exon4012103140121099-
GWHAAZE00000007exon4012084440120936-
GWHAAZE00000007exon4012001340120254-
GWHAAZE00000007exon4011956740119705-
GWHAAZE00000007exon4011937840119434-
GWHAAZE00000007exon4011808740118221-
GWHAAZE00000007exon4011774340117978-
GWHAAZE00000007exon4011716940117213-
GWHAAZE00000007exon4011698540117072-
GWHAAZE00000007five_prime_UTR4012245740122509-
GWHAAZE00000007CDS4012224140122456-
GWHAAZE00000007CDS4012103140121099-
GWHAAZE00000007CDS4012084440120936-
GWHAAZE00000007CDS4012001340120254-
GWHAAZE00000007CDS4011956740119705-
GWHAAZE00000007CDS4011937840119434-
GWHAAZE00000007CDS4011808740118221-
GWHAAZE00000007CDS4011774340117978-
GWHAAZE00000007CDS4011716940117213-
GWHAAZE00000007CDS4011698540117072-
Transcript Sequence

Network for GWHGAAZE024328

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16573.6CLP1_N241153.30E-29
PF16575.6CLP1_P1343223.20E-68
PF06807.15Clp13274381.50E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14399CLP1, HERB mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0031124biological_processmRNA 3'-end processing
GO:0005849cellular_componentmRNA cleavage factor complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.715
SRR3591706second leaf13.522
SRR3591707mature leaf10.273
SRR3591708Shoot apex35.877
SRR3591709Stem18.248
SRR3591710White floral bud12.624
SRR3591711White flower14.859
SRR3591712Green floral bud17.280
SRR3591713Yellow flower9.833
SRP173429 SRR8316895Juvenile bud stage 16.112
SRR8316896Juvenile bud stage 21.799
SRR8316897Juvenile bud stage 11.229
SRR8316894Third green stage 8.283
SRR8316900Third green stage 22.560
SRR8316901Third green stage 18.635
SRR8316898Complete white stage 6.052
SRR8316899Complete white stage 25.466
SRR8316903Complete white stage 10.668
SRR8316902Silver flowering stage6.026
SRR8316904Silver flowering stage6.976
SRR8316905Silver flowering stage3.231
SRR8316906Gold flowering stage 12.926
SRR8316907Gold flowering stage 13.604
SRR8316908Gold flowering stage 11.557
SRP132670SRR6706286Control19.061
SRR6706287Light intensity 50%19.139
SRR6706288Light intensity 20%21.584
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.238
CNS0095593Slightly white alabastrum(diploid) 218.525
CNS0095594Slightly white alabastrum(diploid) 312.906
CNS0095595Whole white alabastrum(diploid) 213.894
CNS0095596Whole white alabastrum(diploid) 313.252
CNS0095597Whole white alabastrum(diploid) 412.049
CNS0095598Silvery flower (diploied) 118.996
CNS0095599Silvery flower (diploied) 217.350
CNS0095600Silvery flower (diploied) 313.989
CNS0095601Golden flower (diploid) 115.308
CNS0095602Golden flower (diploid) 215.728
CNS0095603Golden flower (diploid) 315.648
CNS0095604Slightly white alabastrum(tetraploid) 118.766
CNS0095605Slightly white alabastrum(tetraploid) 214.299
CNS0095606Slightly white alabastrum(tetraploid) 328.142
CNS0095607Whole white alabastrum(tetraploid) 111.726
CNS0095608Whole white alabastrum(tetraploid) 28.607
CNS0095609Whole white alabastrum(tetraploid) 316.568
CNS0095610Silvery flower (tetraploid) 113.437
CNS0095611Silvery flower (tetraploid) 217.163
CNS0095612Silvery flower (tetraploid) 314.954
CNS0095613Golden flower (tetraploid) 17.945
CNS0095614Golden flower (tetraploid) 213.532
CNS0095615Golden flower (tetraploid) 37.754
CRA001975CRR073297Stem 124.063
CRR073298Stem 222.679
CRR073299Stem 324.097
CRR073300Leaf 123.397
CRR073301Leaf 222.893
CRR073302Leaf 323.370
CRR073303Juvenile bud 116.701
CRR073304Juvenile bud 213.627
CRR073305Juvenile bud 321.845
CRR073306Third green 13.778
CRR073307Third green 25.265
CRR073308Third green 35.198
CRR073309Second white 16.614
CRR073310Second white 25.956
CRR073311Second white 35.818
CRR073312Silver flowering 16.272
CRR073313Silver flowering 25.693
CRR073314Silver flowering 34.209
CRR073315Gold flowering 115.403
CRR073316Gold flowering 216.372
CRR073317Gold flowering 312.305
CRR073318Tawny withering 120.057
CRR073319Tawny withering 220.301
CRR073320Tawny withering 319.903