Detail information of GWHGAAZE024324


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009599825.12.4913E-173PREDICTED: probable pectate lyase P59 isoform X1 [Nicotiana tomentosiformis]
COGYP_001628843.11E-30hypothetical protein Bpet0241
Swissprottr|P15722|PLY59_SOLLC6E-169Probable pectate lyase P59 (Precursor)
trEMBLtr|M1A9L8|M1A9L8_SOLTU5E-171Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT5G15110.12E-127Pectate lyase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4009069140091948-
GWHAAZE00000007mRNA4009069140091948-
GWHAAZE00000007exon4009069140091158-
GWHAAZE00000007exon4009126540091948-
GWHAAZE00000007CDS4009126540091948-
GWHAAZE00000007CDS4009069140091158-
Transcript Sequence

Network for GWHGAAZE024324

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41122991.40E-24
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.208
SRR3591706second leaf0.376
SRR3591707mature leaf0.830
SRR3591708Shoot apex1.740
SRR3591709Stem9.886
SRR3591710White floral bud1100.816
SRR3591711White flower55.881
SRR3591712Green floral bud1031.474
SRR3591713Yellow flower32.738
SRP173429 SRR8316895Juvenile bud stage 43.891
SRR8316896Juvenile bud stage 208.981
SRR8316897Juvenile bud stage 134.744
SRR8316894Third green stage 92.002
SRR8316900Third green stage 533.492
SRR8316901Third green stage 553.409
SRR8316898Complete white stage 0.567
SRR8316899Complete white stage 4.702
SRR8316903Complete white stage 0.713
SRR8316902Silver flowering stage9.409
SRR8316904Silver flowering stage17.425
SRR8316905Silver flowering stage5.420
SRR8316906Gold flowering stage 3.038
SRR8316907Gold flowering stage 1.133
SRR8316908Gold flowering stage 0.969
SRP132670SRR6706286Control335.590
SRR6706287Light intensity 50%348.040
SRR6706288Light intensity 20%312.925
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1628.145
CNS0095593Slightly white alabastrum(diploid) 2522.527
CNS0095594Slightly white alabastrum(diploid) 3764.164
CNS0095595Whole white alabastrum(diploid) 21350.566
CNS0095596Whole white alabastrum(diploid) 31598.597
CNS0095597Whole white alabastrum(diploid) 41837.678
CNS0095598Silvery flower (diploied) 147.489
CNS0095599Silvery flower (diploied) 2159.576
CNS0095600Silvery flower (diploied) 336.826
CNS0095601Golden flower (diploid) 145.619
CNS0095602Golden flower (diploid) 231.296
CNS0095603Golden flower (diploid) 329.154
CNS0095604Slightly white alabastrum(tetraploid) 11163.204
CNS0095605Slightly white alabastrum(tetraploid) 21388.473
CNS0095606Slightly white alabastrum(tetraploid) 31.501
CNS0095607Whole white alabastrum(tetraploid) 12209.925
CNS0095608Whole white alabastrum(tetraploid) 22347.905
CNS0095609Whole white alabastrum(tetraploid) 31077.336
CNS0095610Silvery flower (tetraploid) 122.968
CNS0095611Silvery flower (tetraploid) 2108.669
CNS0095612Silvery flower (tetraploid) 3250.977
CNS0095613Golden flower (tetraploid) 150.477
CNS0095614Golden flower (tetraploid) 29.216
CNS0095615Golden flower (tetraploid) 3154.348
CRA001975CRR073297Stem 1120.346
CRR073298Stem 2140.354
CRR073299Stem 376.827
CRR073300Leaf 1569.873
CRR073301Leaf 2383.289
CRR073302Leaf 3228.400
CRR073303Juvenile bud 1435.268
CRR073304Juvenile bud 2291.371
CRR073305Juvenile bud 340.888
CRR073306Third green 1292.187
CRR073307Third green 2410.902
CRR073308Third green 3303.686
CRR073309Second white 116.200
CRR073310Second white 255.479
CRR073311Second white 356.531
CRR073312Silver flowering 1252.379
CRR073313Silver flowering 2216.690
CRR073314Silver flowering 3139.949
CRR073315Gold flowering 1296.197
CRR073316Gold flowering 275.248
CRR073317Gold flowering 3125.778
CRR073318Tawny withering 1263.654
CRR073319Tawny withering 2243.617
CRR073320Tawny withering 3229.276